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[189925_at] mariner transposase

Description F39E9.5 /REP_DB=WormBase Gene ID /WP=CE10106 /TR=O17114 /GB=AAB70370.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=mariner transposase
Cluster 6grp_total > 44      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 32.4
(-1.2)
A 		34
(-1.1)
A 		8.4
(-3)
A 		89.9
(3)
A 		82
B 23.7
(0)
A 		42.3
(3)
A 		24.9
(0.2)
A 		4.7
(-3)
A 		38
C 35.1
(-0.5)
A 		9.4
(-3)
A 		31.6
(-0.8)
A 		70.4
(3)
A 		61
avr 30.4
(-1.4) 		28.6
(-1.7) 		21.6
(-3) 		55
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 6.1
(-2.6)
A 		5.7
(-2.6)
A 		59.2
(3)
A 		2.5
(-3)
A 		4.8
(-2.7)
A 		2.3
(-3)
A 		57
B 21
(-0.1)
A 		38.6
(3)
A 		34.5
(2.3)
A 		4.6
(-2.9)
A 		28.4
(1.2)
A 		4
(-3)
A 		35
C 21.9
(0.1)
A 		33.6
(2.1)
A 		4.2
(-3)
A 		12.1
(-1.6)
A 		4.6
(-2.9)
A 		38.9
(3)
A 		35
avr 16.3
(-0.7) 		26
(1.5) 		32.6
(3) 		6.4
(-3) 		12.6
(-1.6) 		15.1
(-1) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.8
(2.2)
A 		7.4
(-0.2)
A 		2.2
(-3)
A 		13.2
(3)
A 		11
B 7.6
(1.2)
A 		10.4
(3)
A 		5.8
(0.1)
A 		1
(-3)
A 		9
C 11.6
(2.8)
A 		2.7
(-3)
A 		11
(2.4)
A 		11.9
(3)
A 		9
avr 10.3
(3) 		6.8
(-2.3) 		6.3
(-3) 		8.7
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		2
(-2.3)
A 		12.9
(3)
A 		0.6
(-3)
A 		1.5
(-2.6)
A 		0.6
(-3)
A 		12
B 7.3
(0.2)
A 		12.8
(3)
A 		8.4
(0.7)
A 		1.2
(-3)
A 		11.5
(2.3)
A 		1.5
(-2.8)
A 		12
C 8.1
(0.5)
A 		10.2
(1.6)
A 		1.1
(-3)
A 		2.4
(-2.3)
A 		1.5
(-2.8)
A 		13
(3)
A 		12
avr 5.5
(0.6) 		8.3
(3) 		7.5
(2.3) 		1.4
(-3) 		4.8
(-0) 		5
(0.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189925_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4420
Sequence Type Exemplar sequence
Representative Public ID F39E9.5 NCBI
Target Description F39E9.5 /REP_DB=WormBase Gene ID /WP=CE10106 /TR=O17114 /GB=AAB70370.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=mariner transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062101 NCBI Caenorhabditis elegans F39E9.5 (F39E9.5) mRNA, complete cds. 11/11 None
F39E9.5 ENSEMBL cdna:known chromosome:CEL140:II:3307856:3308795:-1 gene:F39E9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019584 2/11 Cross Hyb Matching Probes None
SNAP00000020870 2/11 Cross Hyb Matching Probes None
SNAP00000026030 1/11 Cross Hyb Matching Probes None
SNAP00000018214 2/11 Cross Hyb Matching Probes None
SNAP00000038804 2/11 Cross Hyb Matching Probes None
SNAP00000019635 2/11 Cross Hyb Matching Probes None
SNAP00000003444 1/11 Cross Hyb Matching Probes None
SNAP00000011770 2/11 Cross Hyb Matching Probes None
SNAP00000015307 2/11 Cross Hyb Matching Probes None
SNAP00000018756 2/11 Cross Hyb Matching Probes None
SNAP00000024387 2/11 Cross Hyb Matching Probes None
SNAP00000030233 4/11 Cross Hyb Matching Probes None
GENEFINDER00000030234 4/11 Cross Hyb Matching Probes None
SNAP00000030646 2/11 Cross Hyb Matching Probes None
SNAP00000006133 1/11 Cross Hyb Matching Probes None
SNAP00000010908 3/11 Cross Hyb Matching Probes None
SNAP00000020533 2/11 Cross Hyb Matching Probes None
SNAP00000034188 2/11 Cross Hyb Matching Probes None
D1081.1 5/11 Cross Hyb Matching Probes None
F49F1.13 1/11 Cross Hyb Matching Probes None
M03D4.5 1/11 Cross Hyb Matching Probes None
C17H12.7 7/11 Cross Hyb Matching Probes None
C28D4.6 4/11 Cross Hyb Matching Probes None
C52D10.4 8/11 Cross Hyb Matching Probes None
T27C4.5 2/11 Cross Hyb Matching Probes None
C18C4.4 5/11 Cross Hyb Matching Probes None
R04B5.2 7/11 Cross Hyb Matching Probes None
F14H8.3 6/11 Cross Hyb Matching Probes None
Y113G7A.7 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title mariner transposase
Ensembl F39E9.5
Entrez Gene 185494 Entrez gene
SwissProt O17114 EMBL-EBI
WormBase CE10106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70370 Hypothetical protein F39E9.5 [Caenorhabditis elegans] ref|NP_494502.1| F39E9.5 [Caenorhabditis elegans] 1.0E-116
blast AAF60509 Hypothetical protein Y39A3A.1 [Caenorhabditis elegans] 8.0E-42
blast AAZ67101 transposase [Adineta vaga] 5.0E-18
Sequence
Target Sequence 
>C. ELEGANS:189925_AT
ctcgtcgtaacatagccctggaagatgatccaagagcaacgaaccgcgaactttctgcga
ctctcaagcatccccaaaaaaccatcatcaaccatctccacgaaaccggaagggtagaaa
agttcggtcaactcgttcctcacaatttgcccgattctcagaaaaattgttttgtgacct
ctctctttcgctgctcactaggaaacgaacaacggactgggttaaagatatcattactgg
aaatgataaatgggtattgtataacttcacggaaaaaagtgcttctctcaattgggcggg
acagatcaaagttgttgctgctccatgacaacgcaagaccgcatacaacttttaagaccc
gccagaagctccagacagtcggaatccaaattttatcttacccatcgtattcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGTCGTAACATAGCCCTGGAAGA 618 231 98 Antisense
GAAGATGATCCAAGAGCAACGAACC 410 337 118 Antisense
GATCCAAGAGCAACGAACCGCGAAC 467 415 124 Antisense
GAGCAACGAACCGCGAACTTTCTGC 266 391 131 Antisense
GCAACGAACCGCGAACTTTCTGCGA 239 321 133 Antisense
ATGGGTATTGTATAACTTCACGGAA 625 49 347 Antisense
GCTTCTCTCAATTGGGCGGGACAGA 463 305 378 Antisense
CTCTCAATTGGGCGGGACAGATCAA 598 229 382 Antisense
GGGCGGGACAGATCAAAGTTGTTGC 634 491 391 Antisense
ATCCAAATTTTATCTTACCCATCGT 301 33 481 Antisense
ATTTTATCTTACCCATCGTATTCGC 534 13 487 Antisense
Sequence Source Affymetrix Proprietary Database