[Home] | [Total List]

[189924_at] thrombospondin-like

Description Y8A9A.2 /REP_DB=WormBase Gene ID /WP=CE21336 /TR=Q9TYK4 /GB=AAK18995.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=thrombospondin-like
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 664.8
(3)
P 		228.3
(-2.3)
P 		166.3
(-3)
P 		198.9
(-2.6)
P 		499
B 708
(3)
P 		217.3
(-2.4)
P 		164.7
(-3)
P 		183
(-2.8)
P 		543
C 583.1
(3)
P 		182.8
(-2.9)
P 		174
(-3)
P 		205.6
(-2.5)
P 		409
avr 652
(3) 		209.5
(-2.5) 		168.3
(-3) 		195.8
(-2.7) 		484

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 546.9
(3)
P 		492.2
(2.2)
P 		186.9
(-2.1)
P 		249.8
(-1.2)
P 		259.6
(-1.1)
P 		122.9
(-3)
P 		424
B 501.6
(3)
P 		390.7
(1.3)
P 		224.9
(-1.3)
P 		259.4
(-0.7)
P 		175
(-2)
P 		111.7
(-3)
P 		390
C 583.6
(3)
P 		378.1
(0.2)
P 		264.7
(-1.3)
P 		210.8
(-2.1)
P 		247.6
(-1.6)
P 		141.3
(-3)
P 		442
avr 544
(3) 		420.3
(1.2) 		225.5
(-1.6) 		240
(-1.4) 		227.4
(-1.5) 		125.3
(-3) 		419
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 242.1
(3)
P 		49.6
(-2.4)
P 		43.5
(-2.6)
P 		29.1
(-3)
P 		213
B 225.8
(3)
P 		53.7
(-2.5)
P 		38.2
(-3)
P 		39
(-3)
P 		188
C 193
(3)
P 		52.6
(-2.3)
P 		60.6
(-2)
P 		34.7
(-3)
P 		158
avr 220.3
(3) 		52
(-2.4) 		47.4
(-2.6) 		34.3
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 100.8
(-0.1)
P 		175.1
(3)
P 		40.7
(-2.6)
P 		63.3
(-1.6)
P 		78.3
(-1)
P 		29.9
(-3)
P 		145
B 174.5
(3)
P 		130.1
(1)
P 		54.6
(-2.4)
P 		68.7
(-1.8)
P 		71.1
(-1.7)
P 		41.7
(-3)
P 		133
C 216.3
(3)
P 		115.4
(-0.5)
P 		67.4
(-2.1)
P 		42.4
(-3)
P 		80.1
(-1.7)
P 		47.3
(-2.8)
P 		174
avr 163.9
(3) 		140.2
(1.9) 		54.2
(-2.3) 		58.1
(-2.1) 		76.5
(-1.2) 		39.6
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189924_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5310
Sequence Type Exemplar sequence
Representative Public ID Y8A9A.2 NCBI
Target Description Y8A9A.2 /REP_DB=WormBase Gene ID /WP=CE21336 /TR=Q9TYK4 /GB=AAK18995.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=thrombospondin-like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062253(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062253 NCBI Caenorhabditis elegans Y8A9A.2 (thrombospondin-like) mRNA, complete cds. 11/11 None
SNAP00000029991 ENSEMBL cdna:SNAP chromosome:CEL140:II:3795617:3800521:1 11/11 None
GENEFINDER00000029994 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3795617:3800521:1 11/11 None
Y8A9A.2 ENSEMBL cdna:known chromosome:CEL140:II:3795617:3800601:1 gene:Y8A9A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3795615-3800520(+) 98.6 100.0
Public Domain and Genome References
Gene Title thrombospondin-like
Ensembl Y8A9A.2
Entrez Gene 173723 Entrez gene
SwissProt Q9TYK4 EMBL-EBI
WormBase CE21336 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18995 Hypothetical protein Y8A9A.2 [Caenorhabditis elegans] ref|NP_494654.1| Y8A9A.2 [Caenorhabditis elegans] 0.0
blast CAE56519 Hypothetical protein CBG24242 [Caenorhabditis briggsae] 0.0
blast CAE58682 Hypothetical protein CBG01856 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.6E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.0E-11
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.6E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.0E-11
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 2.6E-5
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:189924_AT
ttcccaagaacatcctgctgtactggattcaagaaaatggttaacatcactggtcgtaca
ttctactgtggaccgcttcctgttgtgccagcattcaatcctgagcagactacttgctgt
gatcctgagaaaactggactttggaacgactggggcgcctggactacttgcagtgccact
tgtggaggatgtggaacacagactagaagccgaacatgcgcatcagctccatacggttgc
ccttgcacaggagatctgactgaaacccaatcgtgcgcaaaacaagtttgcacaactggc
gctcagtgctgcgctggcaagttcgtggccaccggatacgacggtgcacaatactgccag
gacaacacgccggaagtgtgcacgggaacctggacagaatgggcaacgctggaaggagct
gtgtgcaatgatacttgcggaaattgtggaataataccaacgtcccgttattgcttccca
tcgggctgtcagtgcagcggagcctacaccggaactcaagcatgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCAAGAACATCCTGCTGTACTG 384 697 3484 Antisense
AACATCACTGGTCGTACATTCTACT 16 139 3526 Antisense
GTTGTGCCAGCATTCAATCCTGAGC 607 435 3565 Antisense
AGACTACTTGCTGTGATCCTGAGAA 291 71 3590 Antisense
AGAAGCCGAACATGCGCATCAGCTC 61 75 3688 Antisense
GTTGCCCTTGCACAGGAGATCTGAC 85 441 3719 Antisense
TGACTGAAACCCAATCGTGCGCAAA 681 569 3740 Antisense
TTGCACAACTGGCGCTCAGTGCTGC 430 701 3771 Antisense
GACGGTGCACAATACTGCCAGGACA 196 377 3823 Antisense
CCCATCGGGCTGTCAGTGCAGCGGA 526 257 3960 Antisense
CCTACACCGGAACTCAAGCATGCGC 314 265 3986 Antisense
Sequence Source Affymetrix Proprietary Database