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[189919_s_at] S. cerevisiae Snf8p

Description C27F2.5 /REP_DB=WormBase Gene ID /WP=CE26875 /TR=Q18258 /GB=AAK67217.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=S. cerevisiae Snf8p
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 65      6grp_total > 70      4grp_total > 05      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1502
1 2 3 4 range
A 1130.2
(-0.1)
P 		654.5
(-2.6)
P 		576.6
(-3)
P 		1714.8
(3)
P 		1138
B 1067.5
(-1.1)
P 		715.8
(-2.6)
P 		608.3
(-3)
P 		2078.9
(3)
P 		1471
C 1290.2
(-0.3)
P 		701
(-2.8)
P 		664
(-3)
P 		2063.6
(3)
P 		1400
avr 1162.6
(-0.5) 		690.4
(-2.7) 		616.3
(-3) 		1952.4
(3) 		1336

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 1149.3
(-2.9)
P 		1280.2
(-0.6)
P 		1471.9
(2.8)
P 		1481.2
(3)
P 		1146.4
(-3)
P 		1232.4
(-1.5)
P 		335
B 1151.8
(-2.4)
P 		1101.7
(-3)
P 		1569.2
(3)
P 		1444.2
(1.4)
P 		1118.3
(-2.8)
P 		1199.8
(-1.7)
P 		468
C 1125.2
(-2.7)
P 		1252.9
(-1.3)
P 		1346.7
(-0.3)
P 		1664.8
(3)
P 		1092.5
(-3)
P 		1366.9
(-0.1)
P 		572
avr 1142.1
(-2.7) 		1211.6
(-1.6) 		1462.6
(2) 		1530.1
(3) 		1119.1
(-3) 		1266.4
(-0.8) 		411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 411.5
(3)
P 		142.1
(-3)
P 		150.7
(-2.8)
P 		251
(-0.6)
P 		269
B 340.4
(1)
P 		176.8
(-2.3)
P 		140.9
(-3)
P 		443
(3)
P 		302
C 427.1
(3)
P 		201.5
(-3)
P 		231.4
(-2.2)
P 		348
(0.9)
P 		226
avr 393
(3) 		173.5
(-3) 		174.3
(-3) 		347.3
(1.8) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 211.9
(-3)
P 		455.3
(3)
P 		320.6
(-0.3)
P 		375.7
(1)
P 		345.9
(0.3)
P 		300.1
(-0.8)
P 		243
B 400.8
(-0.7)
P 		366.7
(-3)
P 		381.1
(-2)
P 		382.5
(-1.9)
P 		454.4
(3)
P 		447.4
(2.5)
P 		88
C 417.1
(1)
P 		382.3
(-0.7)
P 		342.8
(-2.6)
P 		334.8
(-3)
P 		353.5
(-2.1)
P 		457.6
(3)
P 		123
avr 343.3
(-3) 		401.4
(3) 		348.2
(-2.5) 		364.3
(-0.8) 		384.6
(1.2) 		401.7
(3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189919_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6825
Sequence Type Exemplar sequence
Representative Public ID C27F2.5 NCBI
Target Description C27F2.5 /REP_DB=WormBase Gene ID /WP=CE26875 /TR=Q18258 /GB=AAK67217.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=S. cerevisiae Snf8p
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065651 NCBI Caenorhabditis elegans C27F2.5 (C27F2.5) mRNA, complete cds. 11/11 None
SNAP00000001013 ENSEMBL cdna:SNAP chromosome:CEL140:III:4960571:4962999:-1 11/11 None
GENEFINDER00000001022 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4960571:4961673:-1 11/11 None
C27F2.5.1 ENSEMBL cdna:known chromosome:CEL140:III:4960384:4961674:-1 gene:C27F2.5 11/11 None
C27F2.5.2 ENSEMBL cdna:known chromosome:CEL140:III:4960384:4962453:-1 gene:C27F2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4960570-4962478(-) 100.0 100.0
Public Domain and Genome References
Gene Title S. cerevisiae Snf8p
Ensembl C27F2.5
Entrez Gene 175672 Entrez gene
SwissProt Q18258 EMBL-EBI
WormBase CE26875 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15086_AT expressed protein at
ATH1-121501:253944_AT expressed protein at
CANINE_2:CFAAFFX.25828.1.S1_AT similar to EAP30 subunit of ELL complex cfa
CANINE_2:CFAAFFX.25830.1.S1_AT similar to EAP30 subunit of ELL complex cfa
DROSOPHILA_2:1639430_AT dm
DROSGENOME1:150331_AT dm
CHICKEN:GGA.12283.1.S1_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) gga
HG-U133A:218391_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U133A_2:218391_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U133_PLUS_2:218391_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-FOCUS:218391_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HU35KSUBC:RC_T26914_R_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
U133_X3P:G6005754_3P_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U95C:59966_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U133_PLUS_2:242790_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U133B:242790_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
U133_X3P:HS2.382609.1.S1_3P_X_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
U133_X3P:HS.127249.0.A1_3P_X_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
U133_X3P:242790_3P_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U133_PLUS_2:1560577_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U95C:66694_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
HG-U95E:84003_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) hs
MOUSE430A_2:1432526_A_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) mm
MOE430A:1432526_A_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) mm
MOUSE430_2:1432526_A_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) mm
MG-U74BV2:109713_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) mm
MG-U74BV2:113881_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA mm
MG-U74CV2:140816_R_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA mm
MG-U74CV2:169755_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA mm
MU19KSUBA:TC18724_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA mm
MU19KSUBA:TC18724_G_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA mm
MU19KSUBA:TC22915_AT SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) (Snf8), mRNA mm
RG-U34A:RC_AA891666_G_AT similar to EAP30 subunit of ELL complex (predicted) rn
RG-U34A:RC_AA891666_AT similar to EAP30 subunit of ELL complex (predicted) rn
RAE230A:1372581_AT similar to EAP30 subunit of ELL complex (predicted) rn
RAT230_2:1372581_AT similar to EAP30 subunit of ELL complex (predicted) rn
RAE230B:1384219_AT Similar to EAP30 subunit of ELL complex (predicted) rn
RAT230_2:1384219_AT Similar to EAP30 subunit of ELL complex (predicted) rn
RG-U34C:RC_AI234298_AT Similar to EAP30 subunit of ELL complex (predicted) rn
YEAST_2:1769819_AT Component of the ESCRT-II complex, which is involved in ubiquitin-dependent sorting of proteins into the endosome; appears to be functionally related to SNF7; involved in glucose derepression Sc
Protein Similarities
Method ID Description E-Value
blast T15660 hypothetical protein C27F2.5 - Caenorhabditis elegans 0.0
blast NP_498052 C27F2.5 [Caenorhabditis elegans] gb|AAK67217.1| Hypothetical protein C27F2.5 [Caenorhabditis elegans] 1.0E-134
blast T15660 hypothetical protein C27F2.5 - Caenorhabditis elegans 1.0E-134
blast CAE71312 Hypothetical protein CBG18203 [Caenorhabditis briggsae] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR007286 EMBL-EBI EAP30 4.2E-63
Pfam IPR007286 EMBL-EBI EAP30 4.2E-63
Sequence
Target Sequence 
>C. ELEGANS:189919_S_AT
aactctcaatttcgtcgtcattttcaagaaatgtgtgctagtgttggagttgatccgtta
gcatcgagtaaaggattctgggcgaaagcgcttggtttcggagacttttattacgagctg
ggaattcaaattgttgagatttgtctttctacaacacacataaatggaggcatcatgaca
gttgaagaaattcgtaatcgattaatgagaacacgatcaagaactcgtaaagataccatt
tcaacagatgatattcttcgtgccgtagataaattgaaagtacttggaaacggatttgaa
ttggttcctctcggtggtggtcgttttctggttcagtcggttccaggagaattgagtatg
gatcattcaagagttcttcaacttgcagaagatgctgcttacgttacaaaggaattgatt
attgataaattgagatgggacgaagcccgcgcaagctctgccttggaacatcttgtgaag
gaaggactcgcatggacagatgaacaggcatccgatacaacacaatactggttcccttca
cttttccttcaacaatattgtcattcgtcatcaagcacttcagtttccgaatcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTCAATTTCGTCGTCATTTTC 506 139 484 Antisense
AGCGCTTGGTTTCGGAGACTTTTAT 626 79 570 Antisense
GATGATATTCTTCGTGCCGTAGATA 630 409 730 Antisense
TCGTTTTCTGGTTCAGTCGGTTCCA 3 605 804 Antisense
TTGAGATGGGACGAAGCCCGCGCAA 197 703 913 Antisense
AGCTCTGCCTTGGAACATCTTGTGA 144 81 937 Antisense
GAAGGAAGGACTCGCATGGACAGAT 469 333 960 Antisense
TACAACACAATACTGGTTCCCTTCA 580 641 999 Antisense
CCTTCACTTTTCCTTCAACAATATT 238 269 1018 Antisense
TGTCATTCGTCATCAAGCACTTCAG 119 559 1042 Antisense
AAGCACTTCAGTTTCCGAATCTTTA 479 149 1056 Antisense
Sequence Source Affymetrix Proprietary Database