[Home] | [Total List]

[189915_s_at] C-type lectin domain

Description B0365.6 /REP_DB=WormBase Gene ID /WP=CE07723 /TR=P90732 /GB=CAB02691.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 43      6grp_total > 61      4grp_total > 60      6grp_highest_sub > 03_04      6grp_cgc > 93      6grp_high1_sub > 04      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2438
1 2 3 4 range
A 1752.7
(1.7)
P 		1649.7
(1.4)
P 		2187.9
(3)
P 		151
(-3)
P 		2037
B 1731.9
(1)
P 		1784.6
(1.1)
P 		2552.7
(3)
P 		114.6
(-3)
P 		2438
C 1729.3
(1.2)
P 		1899.3
(1.7)
P 		2393
(3)
P 		168.5
(-3)
P 		2225
avr 1738
(1.3) 		1777.9
(1.4) 		2377.9
(3) 		144.7
(-3) 		2233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1298
1 2 3 4 5 6 range
A 1033.2
(-0.8)
P 		814.3
(-1.9)
P 		1746
(3)
P 		1358.9
(0.9)
P 		934.7
(-1.3)
P 		613.3
(-3)
P 		1133
B 1345.6
(0.4)
P 		985.5
(-1.6)
P 		1817.1
(3)
P 		1617.9
(1.9)
P 		813
(-2.5)
P 		724.6
(-3)
P 		1093
C 687.3
(-3)
P 		890.5
(-2)
P 		1159.8
(-0.7)
P 		1911.2
(3)
P 		801.4
(-2.4)
P 		870.7
(-2.1)
P 		1224
avr 1022
(-1.1) 		896.8
(-1.9) 		1574.3
(2.6) 		1629.3
(3) 		849.7
(-2.2) 		736.2
(-3) 		893
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 812
1 2 3 4 range
A 638.2
(3)
P 		358.1
(0.3)
P 		572
(2.4)
P 		22.1
(-3)
P 		616
B 552.3
(2.6)
P 		440.8
(1.4)
P 		591.5
(3)
P 		24.4
(-3)
P 		567
C 572.5
(1.1)
P 		546.1
(0.9)
P 		834
(3)
P 		28.4
(-3)
P 		806
avr 587.7
(2.3) 		448.3
(1) 		665.8
(3) 		25
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 190.5
(-1.9)
P 		289.6
(0.6)
P 		380.2
(3)
P 		344.6
(2.1)
P 		282.1
(0.5)
P 		149.3
(-3)
P 		231
B 468.2
(3)
P 		328
(-1.2)
P 		441.3
(2.2)
P 		428.5
(1.8)
P 		330.3
(-1.2)
P 		270.2
(-3)
P 		198
C 254.7
(-3)
P 		271.7
(-2.2)
P 		295.2
(-1.1)
P 		384.3
(3)
P 		259.3
(-2.8)
P 		291.5
(-1.3)
P 		130
avr 304.5
(-0.3) 		296.4
(-0.6) 		372.2
(2.5) 		385.8
(3) 		290.6
(-0.8) 		237
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189915_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12721
Sequence Type Exemplar sequence
Representative Public ID B0365.6 NCBI
Target Description B0365.6 /REP_DB=WormBase Gene ID /WP=CE07723 /TR=P90732 /GB=CAB02691.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073870 NCBI Caenorhabditis elegans C-type LECtin family member (clec-41) (clec-41) mRNA, complete cds. 11/11 None
SNAP00000032432 ENSEMBL cdna:SNAP chromosome:CEL140:V:13138535:13140649:-1 11/11 None
GENEFINDER00000032437 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13138535:13140649:-1 11/11 None
B0365.6.1 ENSEMBL cdna:known chromosome:CEL140:V:13137552:13140676:-1 gene:B0365.6 11/11 None
B0365.6.3 ENSEMBL cdna:known chromosome:CEL140:V:13137553:13140676:-1 gene:B0365.6 11/11 None
B0365.6.2 ENSEMBL cdna:known chromosome:CEL140:V:13137553:13140676:-1 gene:B0365.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13138534-13140649(-) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin domain
Gene Symbol clec-41
Ensembl B0365.6
Entrez Gene 179797 Entrez gene
SwissProt P90732 EMBL-EBI
WormBase CE07723 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02691 Hypothetical protein B0365.6 [Caenorhabditis elegans] ref|NP_506271.1| C-type LECtin family member (clec-41) [Caenorhabditis elegans] 0.0
blast CAE64660 Hypothetical protein CBG09432 [Caenorhabditis briggsae] 0.0
blast CAB04128 Hypothetical protein F16H6.1 [Caenorhabditis elegans] ref|NP_507557.1| C-type LECtin family member (clec-42) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.5E-11
Pfam IPR000859 EMBL-EBI CUB 2.5E-5
Pfam IPR000859 EMBL-EBI CUB 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:189915_S_AT
ggctcacttgtccaaattcgattcccagtaatgaatctggatagtcaggcatcaatttcc
atttacagtcgaattgaagacactacacctttggttgttcttcaaggaaattctgcaagc
aatcaatggtacacttcaacaacaaatacaatgaaagtagtgttccgcccatgtattgca
aattgtccgaatgatggtgtcaactatagatgggaagctgatttcaaaccatccactgat
gttactcagccaccagttacagtaaccccaaatccaaataatccatcaggatgtaactca
accattttggtagctccaggatctataagcacacctaattatccaaactattatccaaac
tttttgttatgcatgtatcatctctctacaactggaggatacagaattaatctagatttt
ggagcaattgacactgaacaatgttgtgatattattgaagttcatgatggtccattactc
ggaagtccaaaacttggaatagttagtggtacatggccagcacatgcgaaaacctatcag
tcgtcctccaattcaatgcttgtcactttctcaacagattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCACTTGTCCAAATTCGATTCC 63 539 1024 Antisense
GTCAGGCATCAATTTCCATTTACAG 405 467 1067 Antisense
GACACTACACCTTTGGTTGTTCTTC 437 365 1102 Antisense
AGTGTTCCGCCCATGTATTGCAAAT 619 57 1182 Antisense
GAAGCTGATTTCAAACCATCCACTG 54 343 1237 Antisense
CATCCACTGATGTTACTCAGCCACC 556 211 1253 Antisense
GCATGTATCATCTCTCTACAACTGG 33 311 1394 Antisense
GATGGTCCATTACTCGGAAGTCCAA 545 405 1489 Antisense
TGCGAAAACCTATCAGTCGTCCTCC 56 585 1548 Antisense
CGTCCTCCAATTCAATGCTTGTCAC 41 245 1565 Antisense
GCTTGTCACTTTCTCAACAGATTCA 522 305 1581 Antisense
Sequence Source Affymetrix Proprietary Database