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[189913_at] glucose transporter

Description K09C4.1 /REP_DB=WormBase Gene ID /WP=CE04729 /TR=Q21385 /GB=AAA83627.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glucose transporter
Cluster 6grp_total > 62      4grp_total > 24      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 49.1
(-3)
A 		150
(-0.8)
A 		218.9
(0.7)
P 		322.7
(3)
P 		274
B 78.7
(-3)
A 		146.3
(-1.3)
A 		230.7
(0.8)
P 		320.9
(3)
A 		242
C 58.2
(-3)
A 		122.1
(-1.7)
A 		242.3
(0.7)
P 		360.5
(3)
A 		302
avr 62
(-3) 		139.5
(-1.3) 		230.6
(0.7) 		334.7
(3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 91.1
(-0.3)
A 		119.5
(0.6)
A 		194.4
(3)
P 		173.2
(2.3)
P 		134.2
(1)
P 		9.2
(-3)
A 		185
B 74.7
(-3)
A 		141.5
(0.6)
A 		186.7
(3)
M 		116.5
(-0.8)
A 		102.5
(-1.5)
P 		79.7
(-2.7)
A 		112
C 95.3
(-2.1)
A 		133.2
(0.8)
M 		161.5
(3)
P 		156.2
(2.6)
M 		115.2
(-0.6)
P 		83.8
(-3)
A 		78
avr 87
(-1.6) 		131.4
(0.6) 		180.9
(3) 		148.6
(1.4) 		117.3
(-0.1) 		57.6
(-3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 17.9
(-3)
A 		32.6
(-0.8)
A 		57.2
(3)
P 		47.2
(1.5)
P 		39
B 25.1
(-3)
A 		36.1
(-1.5)
A 		53.5
(0.9)
P 		68.4
(3)
A 		43
C 19.3
(-3)
A 		35.1
(-1.5)
A 		84.4
(3)
P 		60.8
(0.8)
A 		65
avr 20.8
(-3) 		34.6
(-1.1) 		65
(3) 		58.8
(2.2) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 16.8
(-0.9)
A 		42.5
(2.8)
A 		42.3
(2.8)
P 		43.9
(3)
P 		40.5
(2.5)
P 		2.2
(-3)
A 		42
B 26
(-3)
A 		47.1
(3)
A 		45.3
(2.5)
M 		30.9
(-1.6)
A 		41.6
(1.4)
P 		29.7
(-1.9)
A 		21
C 35.3
(0.3)
A 		40.7
(2.8)
M 		41.1
(3)
P 		31.4
(-1.4)
M 		37.3
(1.3)
P 		28
(-3)
A 		13
avr 26
(-1.5) 		43.4
(3) 		42.9
(2.9) 		35.4
(0.9) 		39.8
(2.1) 		20
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189913_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18523
Sequence Type Exemplar sequence
Representative Public ID K09C4.1 NCBI
Target Description K09C4.1 /REP_DB=WormBase Gene ID /WP=CE04729 /TR=Q21385 /GB=AAA83627.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glucose transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076168 NCBI Caenorhabditis elegans K09C4.1 (K09C4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004464 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3298899:3301373:1 10/11 None
K09C4.1 ENSEMBL cdna:known chromosome:CEL140:X:3298871:3301630:1 gene:K09C4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004463 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3298899-3301456(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose transporter
Ensembl K09C4.1
Entrez Gene 180621 Entrez gene
SwissProt Q21385 EMBL-EBI
WormBase CE04729 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83627 Hypothetical protein K09C4.1 [Caenorhabditis elegans] ref|NP_508569.1| K09C4.1 [Caenorhabditis elegans] 0.0
blast CAE58072 Hypothetical protein CBG01151 [Caenorhabditis briggsae] 1.0E-157
blast CAE68408 Hypothetical protein CBG14185 [Caenorhabditis briggsae] 1.0E-156
blast CAE68408 Hypothetical protein CBG14185 [Caenorhabditis briggsae] 1.0E-155
blast CAE58072 Hypothetical protein CBG01151 [Caenorhabditis briggsae] 1.0E-155
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.2E-6
Pfam IPR005828 EMBL-EBI General substrate transporter 1.1E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508569.1 10 9-28,59-81,94-116,126-145,152-174,184-206,304-326,346-363,370-392,428-450
K09C4.1 10 9-28,59-81,94-116,126-145,152-174,184-206,304-326,346-363,370-392,428-450
GENEFINDER00000004464 10 9-28,59-81,94-116,126-145,152-174,184-206,305-327,347-364,371-393,429-451
Sequence
Target Sequence 
>C. ELEGANS:189913_AT
gttccccaccaaattcatcggtacattatttttagatgcattgggaagaaggcctgctat
gggagttgctggtgtgatgaaatactcaaaatccatgttgttattggcttttgaaatttt
ggtgttcatcagcggatccagtttgatcacaaagatcatgtatgttgcggttgaactgtt
aaccatccttgttccagtgacaggtgcaaactcaataagagtgttgtttgttacagaatt
gtttccaccatctgcaagaacagcagttggacaggcaatgttgtttggttcaatggcggt
caattcaccaattgtagcattatatcctatagtcaactcaattttccctccaatattttt
tgtaccatttgtaatttcacaaatgatatttggaatatatttatacagacatatgccaga
gactcgaggtcgtgcggtctatgatatcattgaatctttagacaggaatgtggcttcaag
gactgcatcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCCCCACCAAATTCATCGGTACA 549 441 957 Antisense
GAAGGCCTGCTATGGGAGTTGCTGG 145 333 1004 Antisense
GTGTTCATCAGCGGATCCAGTTTGA 277 485 1078 Antisense
GAACTGTTAACCATCCTTGTTCCAG 104 349 1129 Antisense
ATCCTTGTTCCAGTGACAGGTGCAA 693 39 1141 Antisense
ACAGAATTGTTTCCACCATCTGCAA 391 109 1189 Antisense
GGTTCAATGGCGGTCAATTCACCAA 244 507 1243 Antisense
TTCCCTCCAATATTTTTTGTACCAT 540 697 1300 Antisense
GCCAGAGACTCGAGGTCGTGCGGTC 646 279 1371 Antisense
GAGGTCGTGCGGTCTATGATATCAT 156 403 1382 Antisense
TGTGGCTTCAAGGACTGCATCAGTT 216 555 1425 Antisense
Sequence Source Affymetrix Proprietary Database