[Home] | [Total List]

[189912_at] protein phosphatase

Description ZK354.8 /REP_DB=WormBase Gene ID /WP=CE15324 /TR=P91568 /GB=AAB42260.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster 6grp_total > 95      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 3
(-3)
A 		13.9
(-0.4)
A 		18.5
(0.8)
A 		27.8
(3)
A 		25
B 24.1
(3)
A 		1.6
(-2.9)
A 		4.6
(-2.1)
A 		1.2
(-3)
A 		23
C 16.9
(-3)
A 		28.4
(-0.2)
A 		25.8
(-0.8)
A 		41.7
(3)
A 		25
avr 14.7
(-2.9) 		14.6
(-3) 		16.3
(-1.9) 		23.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 8
(-3)
A 		21.1
(-0.8)
A 		17.5
(-1.4)
A 		39.4
(2.2)
A 		43.9
(3)
A 		19.7
(-1)
A 		36
B 2.6
(-3)
A 		16.8
(-1.1)
A 		28
(0.3)
A 		24.7
(-0.1)
A 		40.3
(2)
A 		48.2
(3)
P 		46
C 15.2
(-1.9)
A 		30.5
(-0.4)
A 		3.4
(-3)
A 		11.3
(-2.2)
A 		57.2
(2.2)
A 		65.9
(3)
P 		63
avr 8.6
(-3) 		22.8
(-0.8) 		16.3
(-1.8) 		25.1
(-0.4) 		47.1
(3) 		44.6
(2.6) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		3
(0.1)
A 		4.8
(3)
A 		4.1
(1.9)
A 		4
B 7.7
(3)
A 		0.4
(-2.9)
A 		1.1
(-2.4)
A 		0.3
(-3)
A 		7
C 5.6
(-3)
A 		8.2
(1.6)
A 		9
(3)
A 		7
(-0.5)
A 		3
avr 4.8
(2) 		3.9
(-2.5) 		5
(3) 		3.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.5
(-3)
A 		7.5
(0.1)
A 		3.8
(-1.8)
A 		10
(1.3)
A 		13.3
(3)
A 		4.8
(-1.3)
A 		12
B 0.9
(-3)
A 		5.6
(-1.4)
A 		6.8
(-0.9)
A 		6.6
(-1)
A 		16.4
(2.4)
A 		18
(3)
P 		17
C 5.6
(-1.7)
A 		9.3
(-0.6)
A 		0.9
(-3)
A 		2.3
(-2.6)
A 		18.5
(2)
A 		22.1
(3)
P 		21
avr 2.7
(-3) 		7.5
(-0.9) 		3.8
(-2.5) 		6.3
(-1.4) 		16.1
(3) 		15
(2.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10828
Sequence Type Exemplar sequence
Representative Public ID ZK354.8 NCBI
Target Description ZK354.8 /REP_DB=WormBase Gene ID /WP=CE15324 /TR=P91568 /GB=AAB42260.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068374 NCBI Caenorhabditis elegans ZK354.8 (ZK354.8) mRNA, complete cds. 11/11 A 
SNAP00000006009 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5304026:5306061:-1 11/11 None
GENEFINDER00000006017 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5304026:5307663:-1 11/11 None
ZK354.8 ENSEMBL cdna:known chromosome:CEL140:IV:5304010:5306121:-1 gene:ZK354.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5304031-5306067(-) 98.55 100.0
Public Domain and Genome References
Gene Title protein phosphatase
Ensembl ZK354.8
Entrez Gene 191295 Entrez gene
SwissProt P91568 EMBL-EBI
WormBase CE15324 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42260 Hypothetical protein ZK354.8 [Caenorhabditis elegans] ref|NP_500775.1| ZK354.8 [Caenorhabditis elegans] 0.0
blast CAE58977 Hypothetical protein CBG02250 [Caenorhabditis briggsae] 1.0E-157
blast CAE58977 Hypothetical protein CBG02250 [Caenorhabditis briggsae] 1.0E-155
blast AAB42261 Hypothetical protein ZK354.9 [Caenorhabditis elegans] ref|NP_500776.1| ZK354.9 [Caenorhabditis elegans] 1.0E-145
blast CAE60407 Hypothetical protein CBG04012 [Caenorhabditis briggsae] 1.0E-118
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.9E-98
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.5E-38
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.9E-98
Sequence
Target Sequence 
>C. ELEGANS:189912_AT
ggaagatgatcattgtgacagggatcgagtacattgtgatgctatgcgagctggttgaga
aggggaagccaaaaagcgcagaatactttccaagccaaattggacaaacaacaaagatcg
ggagactgtgcacggttaccaaggaatccagggtagatatcgataaaactctggtgatgt
caacaatgcgtatttcgaagcccggagacaatgcagttgtcaaaattgtgaagcacatac
actggcgcaattggcctgatcacggtgttcccgacaattttctgtcaccgttccgtttgt
tgactgttgtcaagaattgcacaaaaccaatagttgtacactgctccgctggcgtcggtc
gaactggcacacttgctctcattttgattatcctcgagtcaatttgtcttccggatttca
ttggagttccacgccttctggcaaaacttcgagaggagcgtttcagagcagtccaaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGATGATCATTGTGACAGGGAT 406 531 848 Antisense
AGGGATCGAGTACATTGTGATGCTA 211 57 867 Antisense
GTGATGCTATGCGAGCTGGTTGAGA 58 483 883 Antisense
GAAGGGGAAGCCAAAAAGCGCAGAA 70 333 906 Antisense
AAGCGCAGAATACTTTCCAAGCCAA 570 149 921 Antisense
GATCGGGAGACTGTGCACGGTTACC 563 415 963 Antisense
TGCACGGTTACCAAGGAATCCAGGG 258 573 976 Antisense
CAACAATGCGTATTTCGAAGCCCGG 3 191 1028 Antisense
GTATTTCGAAGCCCGGAGACAATGC 45 453 1037 Antisense
AAGCACATACACTGGCGCAATTGGC 395 151 1078 Antisense
GAGCGTTTCAGAGCAGTCCAAACTG 437 385 1303 Antisense
Sequence Source Affymetrix Proprietary Database