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[189910_s_at] zinc-finger protein

Description R11E3.6 /REP_DB=WormBase Gene ID /WP=CE19548 /TR=Q9TYX3 /GB=AAK39268.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 82      6grp_total > 58      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 423.6
(3)
P 		304.7
(-1.5)
P 		267.2
(-2.9)
P 		264.9
(-3)
P 		159
B 424.5
(3)
P 		206.8
(-3)
P 		220.8
(-2.6)
P 		270.3
(-1.2)
P 		218
C 441.2
(3)
P 		294.6
(-1.7)
P 		253.7
(-3)
P 		343.1
(-0.1)
P 		188
avr 429.8
(3) 		268.7
(-2.3) 		247.2
(-3) 		292.8
(-1.5) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 363.5
(0.7)
P 		379.8
(1.1)
P 		230.2
(-3)
P 		330.2
(-0.2)
P 		331.7
(-0.2)
P 		447.4
(3)
P 		217
B 373.6
(1.6)
P 		281.5
(-2.1)
P 		294
(-1.6)
P 		273.9
(-2.4)
P 		260.2
(-3)
P 		408.5
(3)
P 		148
C 349.7
(-0.6)
P 		289.4
(-3)
P 		328.2
(-1.5)
P 		316.6
(-1.9)
P 		299.3
(-2.6)
P 		442.9
(3)
P 		154
avr 362.3
(0.2) 		316.9
(-1.7) 		284.1
(-3) 		306.9
(-2.1) 		297.1
(-2.5) 		432.9
(3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 154.2
(3)
P 		66.1
(-1.6)
P 		69.8
(-1.4)
P 		38.8
(-3)
P 		115
B 135.4
(3)
P 		51.1
(-3)
P 		51.2
(-3)
P 		57.6
(-2.5)
P 		84
C 146
(3)
P 		84.7
(-1.2)
P 		88.4
(-0.9)
P 		57.9
(-3)
P 		88
avr 145.2
(3) 		67.3
(-2) 		69.8
(-1.8) 		51.4
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 67
(-1.8)
P 		135.1
(3)
P 		50.1
(-3)
P 		83.7
(-0.6)
P 		100.1
(0.5)
P 		108.9
(1.2)
P 		85
B 130
(1.3)
P 		93.7
(-1.3)
P 		71.4
(-3)
P 		72.6
(-2.9)
P 		105.7
(-0.5)
P 		152.3
(3)
P 		81
C 129.6
(1.7)
P 		88.3
(-1.3)
P 		83.5
(-1.6)
P 		63.7
(-3)
P 		96.8
(-0.7)
P 		148.3
(3)
P 		85
avr 108.9
(0.6) 		105.7
(0.3) 		68.3
(-3) 		73.3
(-2.6) 		100.9
(-0.1) 		136.5
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189910_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10446
Sequence Type Exemplar sequence
Representative Public ID R11E3.6 NCBI
Target Description R11E3.6 /REP_DB=WormBase Gene ID /WP=CE19548 /TR=Q9TYX3 /GB=AAK39268.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068244 NCBI Caenorhabditis elegans Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-1) (eor-1) mRNA, complete cds. 11/11 None
SNAP00000009828 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4790337:4795061:-1 11/11 None
GENEFINDER00000009846 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4793383:4799167:-1 11/11 None
R11E3.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4793193:4799347:-1 gene:R11E3.6 11/11 None
R11E3.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:4793212:4799377:-1 gene:R11E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4793388-4799173(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Gene Symbol eor-1
Ensembl R11E3.6
Entrez Gene 177249 Entrez gene
SwissProt Q9TYX3 EMBL-EBI
WormBase CE19548 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604684_AT similar to myoneurin cfa
CANINE_2:CFAAFFX.22676.1.S1_S_AT similar to myoneurin cfa
CANINE_2:CFAAFFX.756.1.S1_AT similar to myoneurin cfa
CANINE_2:CFAAFFX.756.1.S1_S_AT similar to myoneurin cfa
HG-U133_PLUS_2:224206_X_AT myoneurin hs
HG-U133B:224206_X_AT myoneurin hs
HU35KSUBA:RC_AA292098_AT myoneurin hs
HG-U133A:218926_AT myoneurin hs
HG-U133_PLUS_2:218926_AT myoneurin hs
HG-FOCUS:218926_AT myoneurin hs
HG-U133A_2:218926_AT myoneurin hs
U133_X3P:G8388944_3P_A_AT myoneurin hs
U133_X3P:G13569844_3P_AT myoneurin hs
U133_X3P:HS2.407698.1.S1_3P_AT myoneurin hs
HG-U133_PLUS_2:1566109_AT myoneurin hs
HG-U95B:56327_AT myoneurin hs
HG-U95C:61024_AT myoneurin hs
HG-U95E:85784_AT myoneurin hs
U133_X3P:HS2.407698.1.A1_3P_AT Myoneurin hs
HG-U133_PLUS_2:1566108_AT Myoneurin hs
HG-U133_PLUS_2:241730_AT Myoneurin hs
HG-U133B:241730_AT Myoneurin hs
HG-U95D:71165_AT Myoneurin hs
U133_X3P:HS.212765.0.A1_3P_AT Myoneurin hs
MOUSE430A_2:1429584_AT myoneurin mm
MOE430A:1429584_AT myoneurin mm
MOUSE430_2:1429584_AT myoneurin mm
MG-U74BV2:116099_AT myoneurin mm
MG-U74BV2:113338_AT myoneurin mm
MOE430A:1421334_X_AT myoneurin mm
MOUSE430A_2:1421334_X_AT myoneurin mm
MOUSE430_2:1421334_X_AT myoneurin mm
MOE430A:1429585_S_AT myoneurin mm
MOUSE430A_2:1429585_S_AT myoneurin mm
MOUSE430_2:1429585_S_AT myoneurin mm
MOE430A:1440959_S_AT myoneurin mm
MOUSE430A_2:1440959_S_AT myoneurin mm
MOUSE430_2:1440959_S_AT myoneurin mm
MOE430A:1450204_A_AT myoneurin mm
MOUSE430A_2:1450204_A_AT myoneurin mm
MOUSE430_2:1450204_A_AT myoneurin mm
MOE430A:1421333_A_AT myoneurin mm
MOUSE430A_2:1421333_A_AT myoneurin mm
MOUSE430_2:1421333_A_AT myoneurin mm
MG-U74BV2:110589_AT Myoneurin (Mynn), mRNA mm
MG-U74AV2:95923_AT Myoneurin (Mynn), mRNA mm
MU11KSUBA:AA415053_RC_AT Myoneurin (Mynn), mRNA mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM74151 EOR-1 [Caenorhabditis elegans] gb|AAK39268.1| Egl-1 suppressor/dio uptake defective/raf enhancer protein 1 [Caenorhabditis elegans] ref|NP_500645.1| Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-1) [Caenorhabditis elegans] gb|AAM74222.1| EOR-1 [Caenorhabditis elegans] 0.0
blast CAE66385 Hypothetical protein CBG11647 [Caenorhabditis briggsae] 0.0
blast AAM74151 EOR-1 [Caenorhabditis elegans] gb|AAK39268.1| Egl-1 suppressor/dio uptake defective/raf enhancer protein 1 [Caenorhabditis elegans] ref|NP_500645.1| Egl-1 suppressor/DiO uptake defective/raf enhancer family member (eor-1) [Caenorhabditis elegans] gb|AAM74222.1| EOR-1 [Caenorhabditis elegans] 1.0E-141
blast CAE66385 Hypothetical protein CBG11647 [Caenorhabditis briggsae] 8.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-27
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.9E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.0E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.3E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.1E-4
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.3E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.1E-4
Sequence
Target Sequence 
>C. ELEGANS:189910_S_AT
aataatccggatgctctgttccgtccaattacttctgatgatgctgttagcaattggcag
gctactaatgacttttcgacgtactctccgaatcccaacgattacggtggaccatcaact
tacggcaacccttcatctcctcagcgtgccttctcagtcgttcatccatctcaacatcaa
catcatgcccaatcacctggctgtatgtctatgatgaatgttccattacgggacaatcat
catcagatgcagcgacaggattcaccgggagattctgttggaggtggtcaaggaggtggt
ggtggtggtggacctgaaggatcagacaatacacatggagttttgatgacacctaacttg
gtgatgagatctccacataaccggagtgctgtccaaccgcaattcaacaatctctccaca
aactctgatccacaacaacagcagcaacaacagcaactccgtccattctcacttccaacc
tacggacaaatggatttggctcaggcggctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATCCGGATGCTCTGTTCCGTC 514 171 2122 Antisense
GGCAGGCTACTAATGACTTTTCGAC 235 537 2177 Antisense
GACTTTTCGACGTACTCTCCGAATC 599 371 2191 Antisense
GGTGGACCATCAACTTACGGCAACC 432 499 2227 Antisense
TTCATCCATCTCAACATCAACATCA 694 687 2282 Antisense
ATCATGCCCAATCACCTGGCTGTAT 335 29 2303 Antisense
ATGCAGCGACAGGATTCACCGGGAG 89 41 2368 Antisense
GCTGTCCAACCGCAATTCAACAATC 88 295 2509 Antisense
AACAATCTCTCCACAAACTCTGATC 3 135 2527 Antisense
TTCTCACTTCCAACCTACGGACAAA 258 673 2587 Antisense
AAATGGATTTGGCTCAGGCGGCTCA 545 119 2609 Antisense
Sequence Source Affymetrix Proprietary Database