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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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189908_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.2875
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Exemplar sequence
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M195.3 NCBI
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M195.3 /REP_DB=WormBase Gene ID /WP=CE03516 /TR=SW:Q21565 /GB=CAA91293.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=NH(4+) transporter
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_063360(11) |
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NM_063360 NCBI |
Caenorhabditis elegans AMmonium Transporter homolog family member (amt-3) (amt-3) mRNA, complete cds. |
11/11 |
None |
SNAP00000004361 ENSEMBL |
cdna:SNAP chromosome:CEL140:II:8363694:8367993:-1 |
10/11 |
None |
GENEFINDER00000004363 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:II:8363338:8369005:-1 |
11/11 |
None |
M195.3.2 ENSEMBL |
cdna:known chromosome:CEL140:II:8363082:8369005:-1 gene:M195.3 |
11/11 |
A |
M195.3.1 ENSEMBL |
cdna:known chromosome:CEL140:II:8363118:8369081:-1 gene:M195.3 |
11/11 |
A | |
There are no noteworthy cross hybridizing mRNAs found for this probe set. | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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chrII:8363690-8369002(-) |
100.0 |
100.0 |
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Public Domain and Genome References |
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NH(4+) transporter
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amt-3
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M195.3
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174338 Entrez gene
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Q21565 EMBL-EBI
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CE32912 Wormbase
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Functional Annotations |
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6810 |
transport |
inferred from electronic annotation |
QuickGO AmiGO |
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16020 |
membrane |
inferred from electronic annotation |
QuickGO AmiGO |
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8519 |
ammonium transporter activity |
inferred from electronic annotation |
QuickGO AmiGO | |
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blast |
CAA91293 |
Hypothetical protein M195.3 [Caenorhabditis elegans] ref|NP_495761.2| AMmonium Transporter homolog family member (amt-3) [Caenorhabditis elegans] sp|Q21565|AMT3_CAEEL Putative ammonium transporter |
0.0 |
blast |
CAE57701 |
Hypothetical protein CBG00705 [Caenorhabditis briggsae] |
0.0 | |
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Pfam |
IPR010256 EMBL-EBI |
Rh-like protein/ammonium transporter |
1.0E-126 |
Pfam |
IPR010256 EMBL-EBI |
Rh-like protein/ammonium transporter |
2.1E-8 |
Pfam |
IPR010256 EMBL-EBI |
Rh-like protein/ammonium transporter |
1.0E-126 |
NP_495761.2 |
11 |
42-64,77-99,133-155,162-181,196-217,238-260,270-292,299-318,322-344,351-373,399-421 |
M195.3.2 |
11 |
42-64,77-99,133-155,162-181,196-217,238-260,270-292,299-318,322-344,351-373,399-421 |
M195.3.1 |
11 |
42-64,77-99,133-155,162-181,196-217,238-260,270-292,299-318,322-344,351-373,399-421 |
SNAP00000004361 |
8 |
47-69,82-104,138-160,167-186,201-222,243-265,275-297,306-328 |
GENEFINDER00000004363 |
11 |
42-64,77-99,133-155,162-181,196-217,238-260,270-292,299-318,322-344,351-373,399-421 | |
Sequence |
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>C. ELEGANS:189908_AT
ccacaggatttttagctctttttctaatcagcaagagtccacttggtcttcgtgttaccg
attacgaagaacaaattggtgctgacgtcattgaacatggtttggctggaacaaatgtag
caagatatgtattagaaaaaccattatccacaagaacatttcaaacagtcacaaaagcca
tcacaaaatggaaaatgttggctaaaaagaagagccgccagaaaagaatggaagctgcaa
aattaaagagacaagaagagcaggagacattcacaaatggaactgccatagcaaatggca
atggaaatgttctccaccatcgcacaaatgcaaccgagagtaatggaacgggtgctccca
aacgatccaatggtcctgcattcaataatcaaattacacctttagcagttagcagtactg
tatctactgctagaaatggtccaagtacgggcagaagaacagagtctacagctattgaga
ttgaacaaccaatagaagctgttcctccggaagtagttgctgctgctgtacttcctccag
aagaacggcctggtccctctacaaattcaaacgtatcgatcgaggctagtgtggag
BLASTn GenBank NR |
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CCACAGGATTTTTAGCTCTTTTTCT |
471 |
275 |
1253 |
Antisense |
CAGCAAGAGTCCACTTGGTCTTCGT |
217 |
205 |
1281 |
Antisense |
CTTGGTCTTCGTGTTACCGATTACG |
66 |
217 |
1294 |
Antisense |
TTCTCCACCATCGCACAAATGCAAC |
207 |
691 |
1562 |
Antisense |
ATGGAACGGGTGCTCCCAAACGATC |
386 |
39 |
1595 |
Antisense |
AACGATCCAATGGTCCTGCATTCAA |
195 |
145 |
1613 |
Antisense |
ACCAATAGAAGCTGTTCCTCCGGAA |
333 |
25 |
1740 |
Antisense |
AAGTAGTTGCTGCTGCTGTACTTCC |
167 |
155 |
1763 |
Antisense |
TCCTCCAGAAGAACGGCCTGGTCCC |
565 |
591 |
1785 |
Antisense |
CCTGGTCCCTCTACAAATTCAAACG |
604 |
265 |
1801 |
Antisense |
CGTATCGATCGAGGCTAGTGTGGAG |
494 |
247 |
1824 |
Antisense | |
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Affymetrix Proprietary Database |