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[189903_s_at] protein phosphatase

Description R03D7.8 /REP_DB=WormBase Gene ID /WP=CE01615 /TR=Q09598 /GB=CAA86861.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster 6grp_total > 88      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 30.9
(0.8)
A 		14.6
(-3)
A 		17.1
(-2.4)
A 		40.3
(3)
A 		26
B 49.6
(3)
A 		14.8
(-2.8)
A 		13.3
(-3)
A 		35.2
(0.6)
A 		36
C 11.7
(-2.9)
A 		14.7
(-2.6)
A 		10.1
(-3)
A 		84.2
(3)
A 		74
avr 30.7
(-0.4) 		14.7
(-2.8) 		13.5
(-3) 		53.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 11
(-2.9)
A 		10.2
(-3)
A 		34
(-1.2)
A 		54.4
(0.3)
A 		45.6
(-0.4)
A 		90.9
(3)
A 		81
B 33.3
(-1.5)
A 		35.5
(-1.3)
A 		33.9
(-1.4)
A 		8.7
(-3)
A 		61.4
(0.3)
A 		104.4
(3)
A 		96
C 22.4
(-2.3)
A 		17.1
(-2.7)
A 		28.3
(-1.8)
A 		13
(-3)
A 		60.8
(0.7)
A 		90.1
(3)
P 		77
avr 22.2
(-2.9) 		20.9
(-3) 		32.1
(-2.1) 		25.4
(-2.6) 		55.9
(-0.2) 		95.1
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.3
(3)
A 		3.2
(-3)
A 		4.5
(-2)
A 		5.9
(-1)
A 		8
B 15.8
(3)
A 		3.7
(-2.7)
A 		3.1
(-3)
A 		7.5
(-0.9)
A 		13
C 3.9
(-2.8)
A 		4.2
(-2.6)
A 		3.5
(-3)
A 		14.2
(3)
A 		11
avr 10.3
(3) 		3.7
(-3) 		3.7
(-3) 		9.2
(2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2
(-3)
A 		3.6
(-2.5)
A 		7.4
(-1.4)
A 		13.8
(0.5)
A 		13.8
(0.5)
A 		22.1
(3)
A 		20
B 11.6
(-1.5)
A 		11.8
(-1.4)
A 		8.2
(-2)
A 		2.3
(-3)
A 		25
(0.7)
A 		38.9
(3)
A 		37
C 8.3
(-1.8)
A 		5.2
(-2.4)
A 		7.2
(-2)
A 		2.6
(-3)
A 		19.7
(0.7)
A 		30.2
(3)
P 		28
avr 7.3
(-2.7) 		6.9
(-2.8) 		7.6
(-2.7) 		6.2
(-3) 		19.5
(0.3) 		30.4
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189903_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3443
Sequence Type Exemplar sequence
Representative Public ID R03D7.8 NCBI
Target Description R03D7.8 /REP_DB=WormBase Gene ID /WP=CE01615 /TR=Q09598 /GB=CAA86861.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063958(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063958 NCBI Caenorhabditis elegans R03D7.8 (R03D7.8) mRNA, complete cds. 10/11 None
SNAP00000040573 ENSEMBL cdna:SNAP chromosome:CEL140:II:10953505:10956738:-1 10/11 None
R03D7.8 ENSEMBL cdna:known chromosome:CEL140:II:10953505:10956789:-1 gene:R03D7.8 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040576 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10953501-10956786(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein phosphatase
Ensembl R03D7.8
Entrez Gene 174684 Entrez gene
SwissProt Q09598 EMBL-EBI
WormBase CE36555 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86861 Hypothetical protein R03D7.8 [Caenorhabditis elegans] ref|NP_496359.2| R03D7.8 [Caenorhabditis elegans] 0.0
blast CAE73225 Hypothetical protein CBG20631 [Caenorhabditis briggsae] 0.0
blast CAA86861 Hypothetical protein R03D7.8 [Caenorhabditis elegans] ref|NP_496359.2| R03D7.8 [Caenorhabditis elegans] 1.0E-169
blast CAE73225 Hypothetical protein CBG20631 [Caenorhabditis briggsae] 3.0E-95
blast CAI79237 Hypothetical protein T03F6.8 [Caenorhabditis elegans] emb|CAI79171.1| Hypothetical protein T03F6.8 [Caenorhabditis elegans] ref|NP_001022744.1| T03F6.8 [Caenorhabditis elegans] 3.0E-35
blast AAU90203 putative Serine/threonine protein phosphatase BSL1 [Oryza sativa (japonica cultivar-group)] 4.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.8E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496359.2 1 165-184
R03D7.8 1 165-184
SNAP00000040573 1 196-215
Sequence
Target Sequence 
>C. ELEGANS:189903_S_AT
accagcatttttcagtgtcgtttcccgaagcatgtctttattctccgaggagaacccgaa
acatctccgttccgaatgtcgactcgtcttcatccagtcatcacaagagccgttcaatct
tgtattaaaagaatgtgtacacatatgccatttgctgcaattattggtaaatctgtgctc
gccgtctacagtggattttctccaatgattcgagagaaggggcacattcatcacctgttc
cgaccggttactgcagagcacatgaacgcggtcgagcgacatatcatcttcaatcagcca
tcgaatcgtgtcagaatgtatagaccgaatccaaataccgaaggcgattggtttgggaag
caggctgtcaagagagcttgcaaagcgacgagatgtaatgttatgattcgaggacaatcc
tacgtgccatacggctaccttccgtgctggaacaaccggctcatcaacttgtggtcggct
ccgggatatggctcagactttggagcaattctctcgatttccaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGCATTTTTCAGTGTCGTTTCC 81 85 1354 Antisense
TCCCGAAGCATGTCTTTATTCTCCG 551 597 1376 Antisense
TTCCGAATGTCGACTCGTCTTCATC 213 697 1423 Antisense
TCATCCAGTCATCACAAGAGCCGTT 441 621 1443 Antisense
TATTGGTAAATCTGTGCTCGCCGTC 632 665 1515 Antisense
AGAAGGGGCACATTCATCACCTGTT 565 73 1568 Antisense
CTGTTCCGACCGGTTACTGCAGAGC 491 227 1588 Antisense
GAGCGACATATCATCTTCAATCAGC 195 387 1627 Antisense
ACAATCCTACGTGCCATACGGCTAC 226 111 1767 Antisense
CAACCGGCTCATCAACTTGTGGTCG 585 185 1806 Antisense
GGAGCAATTCTCTCGATTTCCAAGG 691 519 1855 Antisense
Sequence Source Affymetrix Proprietary Database