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[189902_at]

Description C06G3.1 /REP_DB=WormBase Gene ID /WP=CE26866 /TR=Q17755 /GB=AAB03131.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 77      6grp_total > 37      4grp_total > 01      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4395
1 2 3 4 range
A 1698.3
(-1.8)
P 		1259.6
(-3)
P 		1633.2
(-2)
P 		3536.3
(3)
P 		2277
B 1641.5
(-2.3)
P 		1254
(-2.9)
P 		1176.9
(-3)
P 		5287.1
(3)
P 		4110
C 1228.2
(-2.6)
P 		957.9
(-3)
P 		1711
(-2)
P 		5352.6
(3)
P 		4395
avr 1522.7
(-2.4) 		1157.2
(-3) 		1507
(-2.4) 		4725.3
(3) 		3568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1326
1 2 3 4 5 6 range
A 1550.9
(2.4)
P 		1407.5
(1.5)
P 		764.6
(-3)
P 		997.4
(-1.4)
P 		1105.1
(-0.6)
P 		1631.2
(3)
P 		867
B 1141.8
(-1.6)
P 		1769.4
(3)
P 		951.3
(-3)
P 		1013.9
(-2.5)
P 		1226.7
(-1)
P 		1600.5
(1.8)
P 		818
C 2090.4
(3)
P 		1779.3
(1.5)
P 		1375.1
(-0.4)
P 		1393.6
(-0.3)
P 		828.1
(-3)
P 		1703.8
(1.2)
P 		1262
avr 1594.4
(2.4) 		1652.1
(3) 		1030.3
(-3) 		1135
(-2) 		1053.3
(-2.8) 		1645.2
(2.9) 		622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 618.4
(3)
P 		273.4
(-3)
P 		426.9
(-0.3)
P 		517.6
(1.2)
P 		345
B 523.5
(-1.2)
P 		309.7
(-2.7)
P 		272.7
(-3)
P 		1126.7
(3)
P 		854
C 406.6
(-1.7)
P 		275.4
(-3)
P 		596.4
(0.1)
P 		902.5
(3)
P 		627
avr 516.2
(-0.5) 		286.2
(-3) 		432
(-1.4) 		848.9
(3) 		563

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 285.9
(-0.9)
P 		500.6
(3)
P 		166.5
(-3)
P 		253
(-1.4)
P 		333.5
(-0)
P 		397.1
(1.1)
P 		334
B 397.3
(-0.3)
P 		589
(2.9)
P 		231
(-3)
P 		268.6
(-2.4)
P 		498.4
(1.4)
P 		596.8
(3)
P 		366
C 774.8
(3)
P 		542.9
(0.3)
P 		350
(-2)
P 		280.3
(-2.9)
P 		268
(-3)
P 		570.4
(0.6)
P 		507
avr 486
(1.8) 		544.2
(3) 		249.2
(-3) 		267.3
(-2.6) 		366.6
(-0.6) 		521.4
(2.5) 		295
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8672
Sequence Type Exemplar sequence
Representative Public ID C06G3.1 NCBI
Target Description C06G3.1 /REP_DB=WormBase Gene ID /WP=CE26866 /TR=Q17755 /GB=AAB03131.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026132(11), NM_001026133(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026132 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-105) (nhr-105) mRNA, complete cds. 11/11 None
NM_001026133 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-105) (nhr-105) mRNA, complete cds. 11/11 None
SNAP00000008744 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7050120:7053349:1 11/11 None
GENEFINDER00000008751 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7050120:7053349:1 11/11 None
C06G3.1a.1 ENSEMBL cdna:known chromosome:CEL140:IV:7050095:7053419:1 gene:C06G3.1 11/11 None
C06G3.1a.2 ENSEMBL cdna:known chromosome:CEL140:IV:7050140:7053434:1 gene:C06G3.1 11/11 None
C06G3.1b ENSEMBL cdna:known chromosome:CEL140:IV:7050140:7053349:1 gene:C06G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7050152-7053355(+) 100.0 100.0
Public Domain and Genome References
Ensembl C06G3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03131 Nuclear hormone receptor family protein 105, isoform a [Caenorhabditis elegans] ref|NP_001021303.1| Nuclear Hormone Receptor family member (nhr-105) [Caenorhabditis elegans] gb|AAO39193.1| nuclear receptor NHR-105 [Caenorhabditis elegans] 0.0
blast T30101 hypothetical protein C06G3.1 - Caenorhabditis elegans 0.0
blast ABA29341 Nuclear hormone receptor family protein 105, isoform b [Caenorhabditis elegans] ref|NP_001021304.1| Nuclear Hormone Receptor family member (nhr-105) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.0E-26
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.1E-17
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.0E-26
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.0E-26
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.1E-17
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:189902_AT
gaattcccggatttcgagaactcagtgaacgctttcagcaacatttaatgcatcgattct
gtttgagatatactgtgattgaacatggcctctttacagctcaaatgccatatcataaaa
atgtttggttcctctcagaccgaacatgccttgtcagtgaattcgagaatcttccacagg
aaataaagaagcatctcactccgaaagtaataaacgagcaacaattattggcttcattca
cagaaatgctcattcacgaagtagctgatcctctaagaagattgaaacctgattctgttg
aagttgctactgtgaagacgttaatgttgttgaaaccaacttgccttcgagaaattgatg
gtgactacctttctactgaaactgatatcaaatctgtgaacgatgtacgaaaccgtgtaa
taaatggactctacagccattatataaaaaacggaatggatccagaacaacttccaatca
gagttagtgagattttaaacctaactggtggagtggagcagtgtgcagctcgagcccttg
aggaaatgcaccctactcgtgtattcaacttatcatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCCGGATTTCGAGAACTCAG 100 323 803 Antisense
GTGATTGAACATGGCCTCTTTACAG 665 483 877 Antisense
GCCTCTTTACAGCTCAAATGCCATA 55 281 890 Antisense
TGTTTGGTTCCTCTCAGACCGAACA 555 451 924 Antisense
CAGACCGAACATGCCTTGTCAGTGA 628 203 938 Antisense
AAAGAAGCATCTCACTCCGAAAGTA 583 123 987 Antisense
GTTGAAACCAACTTGCCTTCGAGAA 170 439 1131 Antisense
GATGGTGACTACCTTTCTACTGAAA 128 409 1159 Antisense
GCAGCTCGAGCCCTTGAGGAAATGC 452 313 1327 Antisense
GGAAATGCACCCTACTCGTGTATTC 353 527 1344 Antisense
ACTCGTGTATTCAACTTATCATCTT 58 101 1357 Antisense
Sequence Source Affymetrix Proprietary Database