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[189898_s_at] ATP-binding protein

Description C44B7.8 /REP_DB=WormBase Gene ID /WP=CE02546 /TR=Q18597 /GB=AAA68339.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATP-binding protein
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 51      6grp_total > 24      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1356
1 2 3 4 range
A 1768.1
(3)
P 		434.1
(-2.9)
P 		600.7
(-2.2)
P 		412.2
(-3)
P 		1356
B 1716.6
(3)
P 		689.3
(-2.6)
P 		619.7
(-3)
P 		621.5
(-3)
P 		1097
C 1714.6
(3)
P 		661.7
(-2.5)
P 		810.3
(-1.7)
P 		572.3
(-3)
P 		1142
avr 1733.1
(3) 		595
(-2.7) 		676.9
(-2.3) 		535.3
(-3) 		1198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 570
1 2 3 4 5 6 range
A 695.5
(3)
P 		696.8
(3)
P 		614.4
(1.9)
P 		587.1
(1.5)
P 		294.9
(-2.5)
P 		257.7
(-3)
P 		439
B 727.1
(1.9)
P 		824.7
(3)
P 		673.4
(1.3)
P 		429.5
(-1.5)
P 		297.5
(-3)
P 		360.2
(-2.3)
P 		527
C 725.4
(2.4)
P 		779.9
(3)
P 		512.3
(-0.1)
P 		482.5
(-0.4)
P 		254.6
(-3)
P 		379.7
(-1.6)
P 		525
avr 716
(2.4) 		767.1
(3) 		600
(0.9) 		499.7
(-0.3) 		282.3
(-3) 		332.5
(-2.4) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 584
1 2 3 4 range
A 643.8
(3)
P 		94.2
(-2.7)
P 		157
(-2)
P 		60.3
(-3)
P 		584
B 547.4
(3)
P 		170.2
(-2.5)
P 		143.6
(-2.8)
P 		132.4
(-3)
P 		415
C 567.6
(3)
P 		190.2
(-1.8)
P 		282.4
(-0.6)
P 		96.5
(-3)
P 		471
avr 586.3
(3) 		151.5
(-2.3) 		194.3
(-1.8) 		96.4
(-3) 		490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 128.2
(-0.9)
P 		247.8
(3)
P 		133.8
(-0.7)
P 		148.9
(-0.2)
P 		89
(-2.1)
P 		62.7
(-3)
P 		185
B 253
(2.2)
P 		274.5
(3)
P 		163.5
(-1.1)
P 		113.8
(-3)
P 		120.9
(-2.7)
P 		134.3
(-2.2)
P 		161
C 268.9
(3)
P 		238
(2)
P 		130.4
(-1.5)
P 		97
(-2.5)
P 		82.4
(-3)
P 		127.1
(-1.6)
P 		187
avr 216.7
(1.6) 		253.4
(3) 		142.6
(-1.3) 		119.9
(-2.1) 		97.4
(-3) 		108
(-2.6) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189898_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5772
Sequence Type Exemplar sequence
Representative Public ID C44B7.8 NCBI
Target Description C44B7.8 /REP_DB=WormBase Gene ID /WP=CE02546 /TR=Q18597 /GB=AAA68339.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063006 NCBI Caenorhabditis elegans Peroxisomal Membrane Protein related family member (pmp-1) (pmp-1) mRNA, complete cds. 11/11 None
SNAP00000042325 ENSEMBL cdna:SNAP chromosome:CEL140:II:6880704:6883666:-1 11/11 None
GENEFINDER00000042335 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6880704:6883666:-1 11/11 None
C44B7.8 ENSEMBL cdna:known chromosome:CEL140:II:6880628:6883683:-1 gene:C44B7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6880699-6883662(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP-binding protein
Gene Symbol pmp-1
Ensembl C44B7.8
Entrez Gene 174126 Entrez gene
SwissProt Q18597 EMBL-EBI
WormBase CE02546 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68339 Peroxisomal membrane protein related protein 1 [Caenorhabditis elegans] ref|NP_495407.1| Peroxisomal Membrane Protein related family member (pmp-1) [Caenorhabditis elegans] 0.0
blast CAE65985 Hypothetical protein CBG11176 [Caenorhabditis briggsae] 0.0
blast AAA68340 Peroxisomal membrane protein related protein 2 [Caenorhabditis elegans] ref|NP_495408.1| Peroxisomal Membrane Protein related family member (pmp-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010509 EMBL-EBI ABC transporter, N-terminal 1.1E-43
Pfam IPR003439 EMBL-EBI ABC transporter 3.2E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495407.1 3 21-40,81-103,134-156
C44B7.8 3 21-40,81-103,134-156
SNAP00000042325 3 21-40,81-103,134-156
GENEFINDER00000042335 3 21-40,81-103,134-156
Sequence
Target Sequence 
>C. ELEGANS:189898_S_AT
gtcttagttttgaagttccatctggaagaaatgttcttgtttgtggtccaaatggatgtg
gaaagagttctttgttccgaacacttggggaactttggccagttatgggtggaactttga
caaaacctgcaaaaggaaaattattctacgtaccacaaagaccctacatgactcttggaa
ctcttcgagatcaagtcatttatccggatacatcatttgatatgaaaatgaagggaatgt
cagacaaggatttagagcagatgttagaaaatgttcaattaacaaatattcttgaaagag
aaggtggatggtctgcagtacaagactggatggatgtactgtcaggaggagaaaaacaaa
gaattgcgatggctcgattgttctaccacaaaccacaatttgcaattttggatgaatgta
cttctgcagttagtgttgatgttgaaggagcaatgtatcgactgtgccgcgaaatgaaca
tcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTAGTTTTGAAGTTCCATCTGG 351 467 1403 Antisense
ATGTTCTTGTTTGTGGTCCAAATGG 499 47 1433 Antisense
GAAAGAGTTCTTTGTTCCGAACACT 607 359 1463 Antisense
GAACACTTGGGGAACTTTGGCCAGT 171 351 1481 Antisense
GGCCAGTTATGGGTGGAACTTTGAC 534 541 1499 Antisense
TTCTACGTACCACAAAGACCCTACA 49 1 1546 Antisense
AGACCCTACATGACTCTTGGAACTC 88 71 1561 Antisense
CATGACTCTTGGAACTCTTCGAGAT 585 207 1569 Antisense
AAGTCATTTATCCGGATACATCATT 48 159 1595 Antisense
GGAGCAATGTATCGACTGTGCCGCG 170 521 1849 Antisense
GACTGTGCCGCGAAATGAACATCAC 544 375 1862 Antisense
Sequence Source Affymetrix Proprietary Database