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[189897_at]

Description T19B10.10 /REP_DB=WormBase Gene ID /WP=CE13750 /TR=Q19146 /GB=CAA98549.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GABA receptor like
Cluster 6grp_total > 12      4grp_total > 10      6grp_cgc > 51      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 29.1
(-1.6)
A 		66.7
(1.1)
A 		9.6
(-3)
A 		92.4
(3)
A 		83
B 41.9
(-1.6)
A 		28.7
(-3)
A 		39.4
(-1.8)
A 		83.9
(3)
P 		55
C 5.7
(-2.9)
A 		15.5
(-2.6)
A 		1.7
(-3)
A 		192.3
(3)
P 		191
avr 25.6
(-2.5) 		37
(-1.9) 		16.9
(-3) 		122.9
(3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 92.4
(3)
A 		27.3
(-1.7)
A 		70.3
(1.4)
A 		42.9
(-0.6)
A 		32.8
(-1.3)
A 		9.7
(-3)
A 		83
B 30.4
(-0.1)
A 		56
(3)
A 		18.1
(-1.6)
A 		37.1
(0.7)
A 		34.9
(0.4)
A 		6.5
(-3)
A 		50
C 4.6
(-2.8)
A 		90.9
(3)
P 		10.7
(-2.4)
A 		60.8
(1)
A 		15.2
(-2.1)
A 		1.8
(-3)
A 		89
avr 42.5
(1.2) 		58.1
(3) 		33
(0.1) 		46.9
(1.7) 		27.6
(-0.5) 		6
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 10.6
(1.1)
A 		14.5
(3)
A 		2.5
(-3)
A 		13.5
(2.5)
A 		12
B 13.3
(0.4)
A 		7.1
(-3)
A 		9.1
(-1.9)
A 		17.9
(3)
P 		11
C 1.9
(-2.8)
A 		4.4
(-2.3)
A 		0.6
(-3)
A 		32.4
(3)
P 		32
avr 8.6
(-1.4) 		8.7
(-1.4) 		4.1
(-3) 		21.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 17
(3)
A 		9.7
(0)
A 		15.3
(2.3)
A 		10.9
(0.5)
A 		9.9
(0.1)
A 		2.4
(-3)
A 		15
B 10.6
(0)
A 		18.6
(3)
A 		4.4
(-2.3)
A 		9.8
(-0.3)
A 		14.2
(1.4)
A 		2.4
(-3)
A 		16
C 1.7
(-2.8)
A 		27.7
(3)
P 		2.7
(-2.5)
A 		12.2
(-0.4)
A 		4.9
(-2)
A 		0.6
(-3)
A 		27
avr 9.8
(-0.2) 		18.7
(3) 		7.5
(-1) 		11
(0.3) 		9.7
(-0.2) 		1.8
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13904
Sequence Type Exemplar sequence
Representative Public ID T19B10.10 NCBI
Target Description T19B10.10 /REP_DB=WormBase Gene ID /WP=CE13750 /TR=Q19146 /GB=CAA98549.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=GABA receptor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073457 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-33) (srsx-33) mRNA, complete cds. 11/11 None
T19B10.10 ENSEMBL cdna:known chromosome:CEL140:V:11253932:11255117:-1 gene:T19B10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11253931-11261567(-) 99.07 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srsx-33
Ensembl T19B10.10
Entrez Gene 188584 Entrez gene
SwissProt Q7JLH4 EMBL-EBI
WormBase CE38225 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T20544 hypothetical protein T19B10.10 - Caenorhabditis elegans 1.0E-175
blast CAA98549 Hypothetical protein T19B10.10 [Caenorhabditis elegans] ref|NP_505858.2| Serpentine Receptor, class SX family member (srsx-33) [Caenorhabditis elegans] 1.0E-163
blast T20544 hypothetical protein T19B10.10 - Caenorhabditis elegans 1.0E-135
blast CAA98549 Hypothetical protein T19B10.10 [Caenorhabditis elegans] ref|NP_505858.2| Serpentine Receptor, class SX family member (srsx-33) [Caenorhabditis elegans] 1.0E-135
blast CAE75202 Hypothetical protein CBG23149 [Caenorhabditis briggsae] 1.0E-120
blast CAE75202 Hypothetical protein CBG23149 [Caenorhabditis briggsae] 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505858.2 7 10-32,45-64,79-101,122-144,167-189,210-232,242-264
T19B10.10 8 10-32,45-64,79-101,122-144,168-187,208-230,240-259,289-306
Sequence
Target Sequence 
>C. ELEGANS:189897_AT
tgtcagctacctgtattctaccgtcaactatgttctagaccaagtttctatctttgcatc
caactatcatttccaataatttacacgtcttatatcactgttatatcatttcttcaacga
gattctgaaaccatggtcatttgtcaagttccacttgccatgtcaggaaattcatttgag
ctgttcaatcaaggaggtcttctgatcaatgtggcagtagttttaatttactttacaact
tatataaaattgaaaaaagttaccgctaatgcctctcaattgaagaccgtattcaaatca
attttgtataccgtaatttttgtaattcttggctggtgcactgtgaccgtagtcaacatt
ggatgtatacatttagtggaaaatattgagaatcaacacatcatttctatctacgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCAGCTACCTGTATTCTACCGTC 19 559 2947 Antisense
GTATTCTACCGTCAACTATGTTCTA 664 451 2959 Antisense
GACCAAGTTTCTATCTTTGCATCCA 418 383 2984 Antisense
TTTGCATCCAACTATCATTTCCAAT 19 669 2999 Antisense
AAACCATGGTCATTTGTCAAGTTCC 673 125 3074 Antisense
TCAAGTTCCACTTGCCATGTCAGGA 86 633 3090 Antisense
GAGCTGTTCAATCAAGGAGGTCTTC 223 387 3124 Antisense
AGGAGGTCTTCTGATCAATGTGGCA 168 57 3138 Antisense
ACCGCTAATGCCTCTCAATTGAAGA 369 89 3208 Antisense
GCTGGTGCACTGTGACCGTAGTCAA 428 293 3278 Antisense
AACACATCATTTCTATCTACGCTGG 686 135 3341 Antisense
Sequence Source Affymetrix Proprietary Database