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[189895_at] zinc-finger protein

Description F13H6.1 /REP_DB=WormBase Gene ID /WP=CE09373 /TR=O16350 /GB=AAB65883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_high1_10_10 > 19      4grp_high_8_8 > 36      6grp_total > 39      4grp_total > 44      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 493.9
(-1)
P 		703
(3)
M 		410.8
(-2.6)
M 		391.4
(-3)
A 		312
B 457.6
(1.1)
P 		505
(3)
P 		357.6
(-3)
P 		503.6
(2.9)
P 		147
C 515.1
(0.8)
P 		622.7
(3)
P 		369.8
(-2.2)
P 		329.9
(-3)
P 		293
avr 488.9
(-0.2) 		610.2
(3) 		379.4
(-3) 		408.3
(-2.2) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 285.6
(-0.6)
M 		501.9
(3)
P 		139.7
(-3)
A 		307.1
(-0.2)
P 		387.7
(1.1)
P 		421.6
(1.7)
P 		362
B 306.4
(0.5)
P 		361.4
(3)
P 		231.6
(-3)
P 		241.5
(-2.5)
A 		254.7
(-1.9)
P 		243.6
(-2.4)
P 		130
C 499.5
(3)
P 		258.2
(-2.6)
P 		391.7
(0.5)
A 		246.6
(-2.8)
A 		372.5
(0.1)
P 		240.1
(-3)
P 		259
avr 363.8
(2.5) 		373.8
(3) 		254.3
(-3) 		265.1
(-2.5) 		338.3
(1.2) 		301.8
(-0.6) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 179.8
(3)
P 		152.6
(1.7)
M 		107.4
(-0.5)
M 		57.3
(-3)
A 		123
B 145.9
(3)
P 		124.7
(1)
P 		82.9
(-3)
P 		107.3
(-0.7)
P 		63
C 170.5
(2.6)
P 		179
(3)
P 		128.9
(0.6)
P 		55.6
(-3)
P 		123
avr 165.4
(3) 		152.1
(2.1) 		106.4
(-0.8) 		73.4
(-3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 52.7
(-2.1)
M 		178.5
(3)
P 		30.4
(-3)
A 		77.9
(-1.1)
P 		117
(0.5)
P 		102.6
(-0.1)
P 		148
B 106.6
(1.7)
P 		120.3
(3)
P 		56.2
(-3)
P 		64
(-2.3)
A 		103.5
(1.4)
P 		90.8
(0.2)
P 		64
C 185.1
(3)
P 		78.8
(-1.7)
P 		99.7
(-0.8)
A 		49.6
(-3)
A 		120.5
(0.1)
P 		80.4
(-1.6)
P 		136
avr 114.8
(2) 		125.9
(3) 		62.1
(-3) 		63.8
(-2.8) 		113.7
(1.9) 		91.3
(-0.3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11969
Sequence Type Exemplar sequence
Representative Public ID F13H6.1 NCBI
Target Description F13H6.1 /REP_DB=WormBase Gene ID /WP=CE09373 /TR=O16350 /GB=AAB65883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072219 NCBI Caenorhabditis elegans F13H6.1 (F13H6.1) mRNA, complete cds. 11/11 None
SNAP00000034390 ENSEMBL cdna:SNAP chromosome:CEL140:V:6362554:6364330:1 11/11 None
GENEFINDER00000034400 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6359627:6364330:1 11/11 None
F13H6.1 ENSEMBL cdna:known chromosome:CEL140:V:6360071:6365591:1 gene:F13H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6360995-6364330(+) 97.63 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Ensembl F13H6.1
Entrez Gene 179019 Entrez gene
SwissProt O16349 EMBL-EBI
WormBase CE30755 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65884 Hypothetical protein F13H6.1 [Caenorhabditis elegans] ref|NP_504620.2| F13H6.1 [Caenorhabditis elegans] 0.0
blast CAE71867 Hypothetical protein CBG18919 [Caenorhabditis briggsae] 0.0
blast AAF46246 CG9650-PA, isoform A [Drosophila melanogaster] ref|NP_727175.2| CG9650-PA, isoform A [Drosophila melanogaster] 2.0E-34
blast AAF46246 CG9650-PA, isoform A [Drosophila melanogaster] ref|NP_727175.2| CG9650-PA, isoform A [Drosophila melanogaster] 3.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.5E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.5E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.5E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 8.8E-6
Sequence
Target Sequence 
>C. ELEGANS:189895_AT
gtccatctccgatcgcatactggagagaagccttacaagtgtcaactttgtccatatgca
tgtgcacaaagcagtaaactgactcgtcacatgagaacgcatgggcaacaggggaaagag
acatatcactgctacatctgccgaatgcctttctcagttcattctacattggaaaagcat
atgagaaagtgtgtagttagtactcaaggtcgtcgtgaaggaggttctccaccagagcga
tcaattcgtccaacaccttcagcacttgccgaggcaacgtcgcttttggctctttcagca
ccatcaatttcagtccctccacaacctcaagctagcacagtgggccagaatcagagccaa
agccatcaaattgtcctgaactggcttcatgctctcaatgcaagcaacagtacgcctaca
gcaacatcgaaagaagatatgattgaggctgatgaggatatggaagagacagaagccagc
gatttgcagtcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCATCTCCGATCGCATACTGGAG 364 477 1366 Antisense
GTGTCAACTTTGTCCATATGCATGT 186 485 1404 Antisense
CATATCACTGCTACATCTGCCGAAT 77 215 1487 Antisense
GCCGAATGCCTTTCTCAGTTCATTC 1 285 1505 Antisense
GTTCTCCACCAGAGCGATCAATTCG 517 443 1589 Antisense
GCACTTGCCGAGGCAACGTCGCTTT 678 315 1627 Antisense
TTTTGGCTCTTTCAGCACCATCAAT 328 677 1649 Antisense
AACCTCAAGCTAGCACAGTGGGCCA 603 147 1688 Antisense
ATTGTCCTGAACTGGCTTCATGCTC 112 3 1735 Antisense
AGTACGCCTACAGCAACATCGAAAG 494 55 1774 Antisense
AGAAGCCAGCGATTTGCAGTCACAC 92 75 1836 Antisense
Sequence Source Affymetrix Proprietary Database