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[189893_at] zinc finger protein

Description F10G2.9 /REP_DB=WormBase Gene ID /WP=CE09336 /TR=Q22960 /GB=AAG24062.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 24      4grp_total > 31      6grp_cgc > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 39.6
(-0.4)
P 		16.2
(-3)
A 		32.6
(-1.2)
A 		70.3
(3)
P 		54
B 52.2
(3)
P 		16.4
(-1.3)
A 		19.1
(-1)
A 		2.5
(-3)
A 		50
C 64.6
(3)
P 		22.6
(-2.3)
A 		16.7
(-3)
A 		42
(0.2)
A 		48
avr 52.1
(3) 		18.4
(-3) 		22.8
(-2.2) 		38.3
(0.5) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 56
(3)
A 		33.3
(0.5)
A 		31.5
(0.3)
A 		40
(1.2)
A 		1.8
(-3)
A 		24.7
(-0.5)
A 		54
B 38.3
(1.8)
A 		21
(-1.9)
A 		44.3
(3)
A 		24.5
(-1.1)
A 		15.5
(-3)
A 		28.9
(-0.2)
M 		29
C 35.4
(1.4)
A 		39.6
(3)
A 		28.1
(-1.4)
A 		38.9
(2.7)
A 		24
(-3)
A 		25
(-2.6)
A 		16
avr 43.2
(3) 		31.3
(0.6) 		34.6
(1.2) 		34.5
(1.2) 		13.8
(-3) 		26.2
(-0.5) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.4
(3)
P 		3.5
(-3)
A 		8.5
(-0.2)
A 		10.3
(0.7)
P 		11
B 16.7
(3)
P 		4
(-1.7)
A 		4.4
(-1.6)
A 		0.5
(-3)
A 		16
C 21.4
(3)
P 		6.5
(-2.7)
A 		5.8
(-3)
A 		7.1
(-2.5)
A 		16
avr 17.5
(3) 		4.7
(-3) 		6.2
(-2.3) 		6
(-2.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.3
(2.2)
A 		11.8
(3)
A 		6.9
(0.4)
A 		10.1
(2.1)
A 		0.5
(-3)
A 		6
(-0.1)
A 		11
B 13.3
(3)
A 		7
(-2.4)
A 		10.8
(0.9)
A 		6.5
(-2.8)
A 		6.3
(-3)
A 		10.8
(0.9)
M 		7
C 13.1
(3)
A 		12.1
(2)
A 		7.1
(-3)
A 		7.8
(-2.3)
A 		7.8
(-2.3)
A 		8.4
(-1.7)
A 		6
avr 12.2
(3) 		10.3
(1.4) 		8.3
(-0.2) 		8.1
(-0.4) 		4.9
(-3) 		8.4
(-0.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189893_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11702
Sequence Type Exemplar sequence
Representative Public ID F10G2.9 NCBI
Target Description F10G2.9 /REP_DB=WormBase Gene ID /WP=CE09336 /TR=Q22960 /GB=AAG24062.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072469
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072469 NCBI Caenorhabditis elegans F10G2.9 (F10G2.9) mRNA, complete cds. None
F10G2.9 ENSEMBL cdna:known chromosome:CEL140:V:7343232:7344077:-1 gene:F10G2.9 None
GENEFINDER00000010644 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7340081:7343763:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7343232-7344118(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-263
Ensembl F10G2.9
Entrez Gene 184318 Entrez gene
SwissProt Q22960 EMBL-EBI
WormBase CE35274 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T29868 hypothetical protein F10G2.8 - Caenorhabditis elegans 0.0
blast NP_504869 Serpentine Receptor, class H family member (srh-187) [Caenorhabditis elegans] gb|AAG24063.1| Serpentine receptor, class h protein 187 [Caenorhabditis elegans] 1.0E-136
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 6.0E-57
blast NP_504870 F10G2.9 [Caenorhabditis elegans] gb|AAG24062.2| Hypothetical protein F10G2.9 [Caenorhabditis elegans] 8.0E-50
blast AAB52310 Hypothetical protein C03G6.10 [Caenorhabditis elegans] ref|NP_504871.1| C03G6.10 [Caenorhabditis elegans] 1.0E-15
blast AAB52308 Hypothetical protein C03G6.8 [Caenorhabditis elegans] ref|NP_504873.1| C03G6.8 [Caenorhabditis elegans] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.9E-10
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.3E-99
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000010644 7 84-103,113-135,156-178,215-237,258-280,295-317,357-379
Sequence
Target Sequence 
>C. ELEGANS:189893_AT
aatcaatgctccaactcgatgtttggtatgtggtagaggagcaagaggatttccttacga
tgtaatttcttgcaaagattgcaaaacatttttccggagaatgtgtatatcaaaatccaa
aattaaatgttacatggctggtaattgttttaatttaagcaaaggtgatcgaattacatt
cagttatttcaacaaactttcaactcaagaccagcttattctaacacgacacgtgttatt
gaaatgcaaaaatttgcatacttccaattatacgatgtaccgggattatcacatcatgcg
caagcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAATGCTCCAACTCGATGTTTG 227 171 21 Antisense
AACTCGATGTTTGGTATGTGGTAGA 512 139 33 Antisense
AAGAGGATTTCCTTACGATGTAATT 143 151 63 Antisense
TCGAATTACATTCAGTTATTTCAAC 162 599 189 Antisense
CAAACTTTCAACTCAAGACCAGCTT 234 191 213 Antisense
ACCAGCTTATTCTAACACGACACGT 275 85 230 Antisense
CACGACACGTGTTATTGAAATGCAA 618 199 245 Antisense
ATTTGCATACTTCCAATTATACGAT 547 17 272 Antisense
ACTTCCAATTATACGATGTACCGGG 383 103 280 Antisense
GTACCGGGATTATCACATCATGCGC 517 457 297 Antisense
GGATTATCACATCATGCGCAAGCTA 463 509 303 Antisense
Sequence Source Affymetrix Proprietary Database