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[189891_at] keratin like protein

Description M02G9.1 /REP_DB=WormBase Gene ID /WP=CE16275 /TR=O17970 /GB=CAB04625.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=keratin like protein
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 33      6grp_highest_nonorm > 71      6grp_total > 10      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 920
1 2 3 4 range
A 84.1
(-2.8)
P 		895.8
(3)
P 		683.6
(1.5)
P 		55.3
(-3)
A 		841
B 53.7
(-2.7)
P 		799.7
(3)
P 		746.3
(2.6)
P 		9.4
(-3)
A 		790
C 56.1
(-3)
P 		928.9
(3)
P 		605.9
(0.8)
P 		72.5
(-2.9)
A 		873
avr 64.6
(-2.9) 		874.8
(3) 		678.6
(1.6) 		45.7
(-3) 		829

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 610
1 2 3 4 5 6 range
A 118.3
(-3)
P 		699.1
(3)
P 		269.6
(-1.4)
P 		358.3
(-0.5)
P 		360.8
(-0.5)
P 		169.8
(-2.5)
P 		581
B 157.1
(-2.8)
P 		727.7
(3)
P 		414.3
(-0.2)
P 		313
(-1.2)
P 		303.5
(-1.3)
P 		133.7
(-3)
P 		594
C 117.8
(-3)
P 		639.9
(3)
P 		347.5
(-0.4)
P 		338.3
(-0.5)
P 		372
(-0.1)
P 		120.5
(-3)
P 		522
avr 131.1
(-3) 		688.9
(3) 		343.8
(-0.7) 		336.5
(-0.8) 		345.4
(-0.7) 		141.3
(-2.9) 		558
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 30.6
(-2.3)
P 		194.5
(3)
P 		178.7
(2.5)
P 		8.1
(-3)
A 		186
B 17.1
(-2.5)
P 		197.5
(3)
P 		172.9
(2.2)
P 		2
(-3)
A 		196
C 18.6
(-2.8)
P 		267.1
(3)
P 		211.2
(1.7)
P 		12.2
(-3)
A 		255
avr 22.1
(-2.6) 		219.7
(3) 		187.6
(2.1) 		7.4
(-3) 		212

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 21.8
(-3)
P 		248.6
(3)
P 		58.7
(-2)
P 		90.9
(-1.2)
P 		108.9
(-0.7)
P 		41.3
(-2.5)
P 		227
B 54.6
(-2.9)
P 		242.2
(3)
P 		100.6
(-1.4)
P 		82.9
(-2)
P 		123.3
(-0.7)
P 		49.9
(-3)
P 		192
C 43.7
(-2.9)
P 		195.2
(3)
P 		88.4
(-1.1)
P 		68
(-1.9)
P 		120.4
(0.1)
P 		40.3
(-3)
P 		155
avr 40
(-3) 		228.7
(3) 		82.6
(-1.6) 		80.6
(-1.7) 		117.5
(-0.5) 		43.8
(-2.9) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189891_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3716
Sequence Type Exemplar sequence
Representative Public ID M02G9.1 NCBI
Target Description M02G9.1 /REP_DB=WormBase Gene ID /WP=CE16275 /TR=O17970 /GB=CAB04625.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=keratin like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063822(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063822 NCBI Caenorhabditis elegans M02G9.1 (M02G9.1) mRNA, complete cds. 11/11 None
SNAP00000014967 ENSEMBL cdna:SNAP chromosome:CEL140:II:10329451:10335498:1 11/11 None
GENEFINDER00000014973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10326204:10335498:1 11/11 None
M02G9.1 ENSEMBL cdna:known chromosome:CEL140:II:10326040:10335672:1 gene:M02G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10326200-10335495(+) 99.49 100.0
Public Domain and Genome References
Gene Title keratin like protein
Ensembl M02G9.1
Entrez Gene 174597 Entrez gene
SwissProt O17970 EMBL-EBI
WormBase CE36944 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04625 Hypothetical protein M02G9.1 [Caenorhabditis elegans] ref|NP_496223.2| M02G9.1 [Caenorhabditis elegans] 0.0
blast CAE59374 Hypothetical protein CBG02727 [Caenorhabditis briggsae] 0.0
blast CAE59374 Hypothetical protein CBG02727 [Caenorhabditis briggsae] 1.0E-163
blast CAE64092 Hypothetical protein CBG08699 [Caenorhabditis briggsae] 1.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496223.2 1 7-24
M02G9.1 1 7-24
GENEFINDER00000014973 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:189891_AT
tcagtccttcaagcttctgatgcctgtcaaccaatgtgcgaacaaagctgtgttcaagaa
tgtcagtcgactactctgaatgttcaagcagccacatgtcaacctgcctgccagtcaatc
tgccagcaatcatgtgctccattgggtacttctgctccagtcatgcaaacaattccagtg
gttccagtggctacagctccagttgcttctacacaattgtgtgctccaaaatgcatcagc
gactgtcagggtctgtgtaagagcaactcgccacaatgcatccagggttgtgacgcttca
tgccaacaactttgcggtacagcaccaactccagcggttccactaactgtcaactacaat
tgtaaccttccatgtgatcagcaatgtactcaacagtgttatcatcaagctccaacatgt
gctccagcttgtgcttcagcatgtgaagctcaatgtccagtggtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTCCTTCAAGCTTCTGATGCCT 263 623 3949 Antisense
GATGCCTGTCAACCAATGTGCGAAC 216 415 3967 Antisense
GTTCAAGCAGCCACATGTCAACCTG 673 445 4030 Antisense
CTGCCAGTCAATCTGCCAGCAATCA 221 237 4056 Antisense
CATGTGCTCCATTGGGTACTTCTGC 83 211 4079 Antisense
GTACTTCTGCTCCAGTCATGCAAAC 32 461 4094 Antisense
TCCAGTGGTTCCAGTGGCTACAGCT 86 587 4122 Antisense
GCTCCAGTTGCTTCTACACAATTGT 510 297 4144 Antisense
GCATCAGCGACTGTCAGGGTCTGTG 558 309 4181 Antisense
AATGCATCCAGGGTTGTGACGCTTC 601 165 4223 Antisense
GTGAAGCTCAATGTCCAGTGGTCTC 663 481 4391 Antisense
Sequence Source Affymetrix Proprietary Database