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[189890_at] Lectin C-type domain

Description F33E2.3 /REP_DB=WormBase Gene ID /WP=CE09904 /TR=O01701 /GB=CAB06542.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 07      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.6
(3)
A 		5
(-2.5)
A 		4.4
(-3)
A 		5.1
(-2.4)
A 		7
B 15.8
(2.1)
A 		17.7
(3)
A 		4.7
(-2.9)
A 		4.5
(-3)
A 		13
C 16.1
(3)
A 		4.8
(-3)
A 		5.6
(-2.6)
A 		8.4
(-1.1)
A 		11
avr 14.5
(3) 		9.2
(-0.3) 		4.9
(-3) 		6
(-2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 23.1
(3)
A 		5.2
(-2.7)
A 		6.8
(-2.1)
A 		7.1
(-2.1)
A 		4.1
(-3)
A 		15.1
(0.5)
A 		19
B 32.3
(3)
A 		15.3
(-0.5)
A 		6.7
(-2.3)
A 		8.9
(-1.8)
A 		4
(-2.8)
A 		3.1
(-3)
A 		29
C 14.8
(2.9)
A 		6.6
(-1.3)
A 		15
(3)
A 		8.6
(-0.3)
A 		3.3
(-3)
A 		4
(-2.6)
A 		12
avr 23.4
(3) 		9
(-1.4) 		9.5
(-1.3) 		8.2
(-1.7) 		3.8
(-3) 		7.4
(-1.9) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 4.2
(3)
A 		1.1
(-2.5)
A 		1.2
(-2.3)
A 		0.8
(-3)
A 		3
B 5
(3)
A 		4.4
(2.1)
A 		1.1
(-2.9)
A 		1
(-3)
A 		4
C 5.3
(3)
A 		1.4
(-3)
A 		1.9
(-2.2)
A 		1.4
(-3)
A 		4
avr 4.8
(3) 		2.3
(-1.1) 		1.4
(-2.5) 		1.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.3
(3)
A 		1.8
(-1.8)
A 		1.5
(-2.4)
A 		1.8
(-1.8)
A 		1.2
(-3)
A 		3.7
(1.8)
A 		3
B 11.2
(3)
A 		5.1
(-0.7)
A 		1.6
(-2.8)
A 		2.4
(-2.3)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		10
C 5.5
(3)
A 		2
(-1.8)
A 		3.8
(0.7)
A 		1.7
(-2.2)
A 		1.1
(-3)
A 		1.3
(-2.7)
A 		4
avr 7
(3) 		3
(-1.2) 		2.3
(-1.9) 		2
(-2.3) 		1.3
(-3) 		2.1
(-2.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189890_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1799
Sequence Type Exemplar sequence
Representative Public ID F33E2.3 NCBI
Target Description F33E2.3 /REP_DB=WormBase Gene ID /WP=CE09904 /TR=O01701 /GB=CAB06542.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060787 NCBI Caenorhabditis elegans F33E2.3 (F33E2.3) mRNA, complete cds. 11/11 None
SNAP00000035919 ENSEMBL cdna:SNAP chromosome:CEL140:I:12586229:12587326:-1 11/11 None
GENEFINDER00000035930 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12586229:12589078:-1 11/11 None
F33E2.3 ENSEMBL cdna:known chromosome:CEL140:I:12586229:12589078:-1 gene:F33E2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12586159-12589009(-) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl F33E2.3
Entrez Gene 185233 Entrez gene
SwissProt O01701 EMBL-EBI
WormBase CE09904 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB06542 Hypothetical protein F33E2.3 [Caenorhabditis elegans] ref|NP_493188.1| F33E2.3 [Caenorhabditis elegans] 0.0
blast CAB06542 Hypothetical protein F33E2.3 [Caenorhabditis elegans] ref|NP_493188.1| F33E2.3 [Caenorhabditis elegans] 1.0E-133
blast CAB06542 Hypothetical protein F33E2.3 [Caenorhabditis elegans] ref|NP_493188.1| F33E2.3 [Caenorhabditis elegans] 1.0E-123
blast CAE57178 Hypothetical protein CBG00017 [Caenorhabditis briggsae] 6.0E-27
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 3.0E-26
blast CAB04093 Hypothetical protein F11D11.1 [Caenorhabditis elegans] ref|NP_507665.1| F11D11.1 [Caenorhabditis elegans] 2.0E-25
blast CAE57178 Hypothetical protein CBG00017 [Caenorhabditis briggsae] 9.0E-25
Sequence
Target Sequence 
>C. ELEGANS:189890_AT
gactcattcaacttcgagccgatcgaccaggaagctaagggattcctgacctaccatctg
atctctgaccgagtccaggcgacttatttcaactacaatggcctcacgtacctggctggc
atctgctacctgatgagaagcatcaccgatgagatcatctgtgacatcaatcgcccgaga
agcttcaatcatatcgagatctgccgaaaggcttttgagctcacctggctcgaacgtcgc
cgtttcccttgtgatgatgtgactcacactcaggagtcgtacggtgtggactgtcaccgc
cttcgcagaagagtgcttgtgggctttgacgagacacatcagaaaattgtccacttgaac
ttcaacaatcgtaccggagaggtctggaaagagttctgcagcaagtgcaacaaaatggaa
agtaccacttccattttcttcgcactcaagctccgtctcccactggtccttccaccccag
atccccgatgagatccttgatgaagctaacgaaatcgtgccaagaatcgccatggcggac
tccttctcggatctcgagtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCATTCAACTTCGAGCCGATCG 504 373 862 Antisense
AGCTAAGGGATTCCTGACCTACCAT 481 63 894 Antisense
GTCCAGGCGACTTATTTCAACTACA 125 477 934 Antisense
TTCAACTACAATGGCCTCACGTACC 282 685 949 Antisense
ATCATCTGTGACATCAATCGCCCGA 373 29 1015 Antisense
AAAGGCTTTTGAGCTCACCTGGCTC 311 121 1068 Antisense
GCCGTTTCCCTTGTGATGATGTGAC 444 283 1100 Antisense
TGTCACCGCCTTCGCAGAAGAGTGC 115 559 1153 Antisense
GAAAGTACCACTTCCATTTTCTTCG 139 361 1279 Antisense
AGAATCGCCATGGCGGACTCCTTCT 503 75 1384 Antisense
ACTCCTTCTCGGATCTCGAGTCAAT 447 97 1400 Antisense
Sequence Source Affymetrix Proprietary Database