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[189889_at]

Description K06A1.3 /REP_DB=WormBase Gene ID /WP=CE28047 /TR=Q09586 /GB=AAC24298.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Cuticulin precursor
Cluster 6grp_total > 66      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2
(-3)
A 		4.6
(-2.2)
A 		22.2
(3)
A 		7.9
(-1.2)
A 		20
B 19.5
(-0.6)
A 		7.4
(-3)
A 		32.2
(1.9)
A 		37.6
(3)
A 		30
C 5.9
(-2.8)
A 		24.2
(-0.3)
A 		4.6
(-3)
A 		48.7
(3)
A 		44
avr 9.1
(-3) 		12.1
(-2.2) 		19.7
(-0.1) 		31.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 5
(-3)
A 		6.1
(-2.8)
A 		15.1
(-1.4)
A 		7.1
(-2.7)
A 		9.6
(-2.3)
A 		42.5
(3)
A 		38
B 4.1
(-2.8)
A 		30.8
(1.6)
A 		15.9
(-0.9)
A 		3.1
(-3)
A 		16.3
(-0.8)
A 		39.6
(3)
M 		37
C 8.8
(-2.7)
A 		20.5
(-1.1)
A 		34.4
(0.8)
A 		6.5
(-3)
A 		28.9
(0)
A 		51.1
(3)
P 		45
avr 6
(-2.9) 		19.1
(-0.9) 		21.8
(-0.5) 		5.6
(-3) 		18.3
(-1) 		44.4
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.7
(-3)
A 		1
(-2.6)
A 		5.8
(3)
A 		1.2
(-2.4)
A 		5
B 6.2
(1.3)
A 		1.8
(-3)
A 		7.5
(2.5)
A 		8
(3)
A 		6
C 1.9
(-2.7)
A 		7
(1.9)
A 		1.6
(-3)
A 		8.2
(3)
A 		7
avr 2.9
(-3) 		3.3
(-2.2) 		5
(1.3) 		5.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2.2
(-2.2)
A 		3.3
(-1.5)
A 		1.8
(-2.4)
A 		2.9
(-1.7)
A 		10.3
(3)
A 		9
B 1.4
(-2.7)
A 		10.3
(1.1)
A 		3.9
(-1.7)
A 		0.8
(-3)
A 		6.6
(-0.5)
A 		14.8
(3)
M 		14
C 3.3
(-2.2)
A 		6.3
(-1.1)
A 		8.8
(-0.2)
A 		1.3
(-3)
A 		9.3
(0)
A 		17.1
(3)
P 		16
avr 1.9
(-2.7) 		6.3
(-0.7) 		5.3
(-1.1) 		1.3
(-3) 		6.3
(-0.7) 		14.1
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189889_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5496
Sequence Type Exemplar sequence
Representative Public ID K06A1.3 NCBI
Target Description K06A1.3 /REP_DB=WormBase Gene ID /WP=CE28047 /TR=Q09586 /GB=AAC24298.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Cuticulin precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062895
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007664 ENSEMBL cdna:SNAP chromosome:CEL140:II:6441376:6446081:1 10/11 None
GENEFINDER00000007673 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6441376:6446117:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6441372-6445273(+) 96.97 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59324 Hypothetical protein CBG02666 [Caenorhabditis briggsae] 0.0
blast AAC24298 Hypothetical protein K06A1.3 [Caenorhabditis elegans] ref|NP_495296.2| K06A1.3 [Caenorhabditis elegans] 0.0
blast AAC24297 Hypothetical protein K06A1.2 [Caenorhabditis elegans] ref|NP_495297.1| K06A1.2 [Caenorhabditis elegans] 8.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.4E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007664 5 453-475,589-611,631-653,682-704,724-743
GENEFINDER00000007673 6 453-475,624-646,666-688,709-731,746-768,789-811
Sequence
Target Sequence 
>C. ELEGANS:189889_AT
aacactttcttgtgctgttttgcttaacaaaactgacgagtcatcagtttgcctgggtga
tgcaagagatacccattgttgctgtacttcatcaagttcacccaaaatatgtgctccgga
gaagcgaaaaatggccgagttgacacaattatggacaatgtcccaagtttggtggctagt
ctttggtcatgttgggctctcgtgtgtggttcttctgctagtcacattctatatgaaatc
agtgaaatatttaccgaaatataatattgtgataccagaggagagtagaatgacgactat
tttatgggcaaagattttcgatgctggaatcggtccatctttatatttctcatttccctt
gatattcttcattttcgatttttctttattcatttatgttaaagatcgaaagtatatcaa
caagtttggtgcactcttccttgctattttcaagctgattacagtcccaatatttgttta
tgaatgctttctttctacagtttgtctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTTTCTTGTGCTGTTTTGCTT 556 135 1677 Antisense
GACGAGTCATCAGTTTGCCTGGGTG 194 379 1711 Antisense
GAGATACCCATTGTTGCTGTACTTC 332 397 1742 Antisense
TGCTGTACTTCATCAAGTTCACCCA 9 583 1756 Antisense
GTCCCAAGTTTGGTGGCTAGTCTTT 474 465 1836 Antisense
GCTAGTCTTTGGTCATGTTGGGCTC 431 303 1851 Antisense
GTGTGTGGTTCTTCTGCTAGTCACA 682 487 1878 Antisense
ATCGGTCCATCTTTATATTTCTCAT 410 35 2005 Antisense
CAACAAGTTTGGTGCACTCTTCCTT 117 189 2094 Antisense
GCACTCTTCCTTGCTATTTTCAAGC 474 315 2107 Antisense
ATGCTTTCTTTCTACAGTTTGTCTC 9 43 2160 Antisense
Sequence Source Affymetrix Proprietary Database