[Home] | [Total List]

[189888_s_at] acid phophatase like

Description F18E2.1 /REP_DB=WormBase Gene ID /WP=CE05662 /TR=Q19553 /GB=CAA99834.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=acid phophatase like
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 558
1 2 3 4 range
A 513.6
(2.8)
P 		377.8
(1)
P 		529.5
(3)
P 		81
(-3)
A 		449
B 491.3
(1.8)
P 		355
(0.3)
P 		605.1
(3)
P 		51
(-3)
A 		554
C 454.1
(1.6)
P 		427.2
(1.3)
P 		572.9
(3)
P 		47.6
(-3)
A 		525
avr 486.3
(2) 		386.7
(0.8) 		569.2
(3) 		59.9
(-3) 		509

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 523
1 2 3 4 5 6 range
A 246.7
(-3)
P 		434.7
(-0.8)
P 		769.9
(3)
P 		731.6
(2.6)
P 		468.7
(-0.5)
P 		393
(-1.3)
P 		523
B 385.6
(-3)
P 		383.8
(-3)
P 		585.3
(1.7)
P 		639.4
(3)
P 		585.8
(1.7)
P 		412.7
(-2.3)
P 		256
C 283.7
(-3)
P 		394.9
(-1.4)
P 		713.7
(3)
P 		574.2
(1.1)
P 		424.2
(-1)
P 		409.2
(-1.2)
P 		430
avr 305.3
(-3) 		404.5
(-1.5) 		689.6
(3) 		648.4
(2.4) 		492.9
(-0.1) 		405
(-1.4) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 187
(3)
P 		82
(-0.6)
P 		138.4
(1.3)
P 		11.9
(-3)
A 		175
B 156.7
(3)
P 		87.7
(0.2)
P 		140.2
(2.3)
P 		10.9
(-3)
A 		146
C 150.3
(1.5)
P 		122.8
(0.6)
P 		199.7
(3)
P 		8
(-3)
A 		192
avr 164.7
(3) 		97.5
(0.4) 		159.4
(2.8) 		10.3
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 45.5
(-3)
P 		154.6
(1.7)
P 		167.7
(2.2)
P 		185.5
(3)
P 		141.4
(1.1)
P 		95.7
(-0.8)
P 		140
B 134.2
(-2.6)
P 		127.7
(-3)
P 		142.1
(-2.2)
P 		169.4
(-0.7)
P 		238
(3)
P 		153.9
(-1.6)
P 		110
C 105.2
(-3)
P 		120.5
(-1.8)
P 		181.7
(3)
P 		115.5
(-2.2)
P 		137.3
(-0.5)
P 		137
(-0.5)
P 		77
avr 95
(-3) 		134.3
(0.1) 		163.8
(2.3) 		156.8
(1.8) 		172.2
(3) 		128.9
(-0.4) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189888_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12921
Sequence Type Exemplar sequence
Representative Public ID F18E2.1 NCBI
Target Description F18E2.1 /REP_DB=WormBase Gene ID /WP=CE05662 /TR=Q19553 /GB=CAA99834.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=acid phophatase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073790 NCBI Caenorhabditis elegans F18E2.1 (F18E2.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032119 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12759734:12763559:-1 11/11 None
F18E2.1 ENSEMBL cdna:known chromosome:CEL140:V:12760216:12762350:-1 gene:F18E2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032112 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12760289-12762350(-) 99.63 100.0
Public Domain and Genome References
Gene Title acid phophatase like
Ensembl F18E2.1
Entrez Gene 179747 Entrez gene
SwissProt Q19553 EMBL-EBI
WormBase CE05662 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14348_AT serine/threonine protein phosphatase family protein at
ATH1-121501:254729_AT serine/threonine protein phosphatase family protein at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99834 Hypothetical protein F18E2.1 [Caenorhabditis elegans] ref|NP_506191.1| F18E2.1 [Caenorhabditis elegans] 0.0
blast CAE63989 Hypothetical protein CBG08581 [Caenorhabditis briggsae] 0.0
blast CAI46574 Hypothetical protein C08B6.14 [Caenorhabditis elegans] emb|CAI46573.2| Hypothetical protein C08B6.14 [Caenorhabditis elegans] ref|NP_001023633.1| C08B6.14 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.5E-19
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.5E-19
Sequence
Target Sequence 
>C. ELEGANS:189888_S_AT
tcaaatcgtgcagcgcatccatggatctttaccttccaacatcgaccattctactgtagt
aatgtgaactccgctgaatgtcaatcgtttgaaaatcgattggttcgtaccggttggctg
gatatgccaggattagaaccactctttttacaaacttccgttgattttggcttctggggg
catgagcactcgtatgaaagattctacccagttgcagatagagcttattggaatgatcca
aatgcttacattaacccaaaagctccagtttatttgattagtggatcagcaggttgtcat
actccagatgcacttttcactgataaaccatggccatggagtgctgcaagaaataatgat
tatggatggtctattgtgacagttgcaaatagaacacatattagagttgaacaaatttca
attgataaaaatgagcagactgttgatgacttttgggttattaaagatgaaggccatatg
cattctggtgagatgagaagagcaaatccaggagcaaagtttccacttcaaaaatgccat
ttcaaggatgtcgcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAATCGTGCAGCGCATCCATGGA 90 629 787 Antisense
GCATCCATGGATCTTTACCTTCCAA 94 311 801 Antisense
CCAACATCGACCATTCTACTGTAGT 572 275 822 Antisense
TGTGAACTCCGCTGAATGTCAATCG 169 555 849 Antisense
GTTCGTACCGGTTGGCTGGATATGC 271 443 889 Antisense
AAACTTCCGTTGATTTTGGCTTCTG 441 127 938 Antisense
CTTCTGGGGGCATGAGCACTCGTAT 484 217 957 Antisense
GATCAGCAGGTTGTCATACTCCAGA 20 421 1070 Antisense
TACTCCAGATGCACTTTTCACTGAT 421 645 1086 Antisense
CCATGGCCATGGAGTGCTGCAAGAA 68 273 1114 Antisense
ATGCCATTTCAAGGATGTCGCCTGT 513 41 1320 Antisense
Sequence Source Affymetrix Proprietary Database