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[189887_at] ribosomal protein

Description C03D6.8 /REP_DB=WormBase Gene ID /WP=CE05202 /TR=SW:Q17606 /GB=CAA99764.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ribosomal protein
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 67      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10094
1 2 3 4 range
A 2566.8
(-2.4)
P 		1902.1
(-2.9)
P 		1695.1
(-3)
P 		10689.5
(3)
P 		8994
B 2805.1
(-2.3)
P 		1655.4
(-3)
P 		1895.3
(-2.8)
P 		11152.3
(3)
P 		9497
C 2830.8
(-2.5)
P 		2094.5
(-3)
P 		2051.9
(-3)
P 		11748.9
(3)
P 		9697
avr 2734.2
(-2.5) 		1884
(-3) 		1880.8
(-3) 		11196.9
(3) 		9316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1034
1 2 3 4 5 6 range
A 1927.5
(0.4)
P 		1872.9
(-0)
P 		1634.8
(-2)
P 		1795.1
(-0.7)
P 		1517.6
(-3)
P 		2232.4
(3)
P 		715
B 1814.2
(1.6)
P 		1306.8
(-3)
P 		1802.4
(1.5)
P 		1608.2
(-0.2)
P 		1808.7
(1.6)
P 		1963.7
(3)
P 		657
C 2281.7
(3)
P 		1247.6
(-3)
P 		1765
(0)
P 		1778.9
(0.1)
P 		2207.9
(2.6)
P 		2189.5
(2.5)
P 		1034
avr 2007.8
(1.9) 		1475.8
(-3) 		1734.1
(-0.6) 		1727.4
(-0.7) 		1844.7
(0.4) 		2128.5
(3) 		653
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1968
1 2 3 4 range
A 934.6
(-0.3)
P 		412.9
(-3)
P 		443.1
(-2.8)
P 		1564.7
(3)
P 		1152
B 894.5
(-1.5)
P 		408.8
(-3)
P 		439.2
(-2.9)
P 		2376.6
(3)
P 		1968
C 937.1
(-1.5)
P 		602.2
(-3)
P 		715.2
(-2.5)
P 		1981
(3)
P 		1379
avr 922.1
(-1.2) 		474.6
(-3) 		532.5
(-2.8) 		1974.1
(3) 		1500

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 355.3
(-3)
P 		666.1
(3)
P 		356
(-3)
P 		455.3
(-1.1)
P 		457.9
(-1)
P 		543.5
(0.6)
P 		311
B 631.2
(1)
P 		435
(-2.8)
P 		437.7
(-2.8)
P 		426
(-3)
P 		734.9
(3)
P 		732.3
(2.9)
P 		309
C 845.7
(3)
P 		380.7
(-2.7)
P 		449.2
(-1.9)
P 		357.7
(-3)
P 		714.4
(1.4)
P 		732.9
(1.6)
P 		488
avr 610.7
(1.6) 		493.9
(-1.1) 		414.3
(-3) 		413
(-3) 		635.7
(2.2) 		669.6
(3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189887_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1283
Sequence Type Exemplar sequence
Representative Public ID C03D6.8 NCBI
Target Description C03D6.8 /REP_DB=WormBase Gene ID /WP=CE05202 /TR=SW:Q17606 /GB=CAA99764.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ribosomal protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060171(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060171 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-24.2) (rpl-24.2) mRNA, complete cds. 11/11 None
SNAP00000028823 ENSEMBL cdna:SNAP chromosome:CEL140:I:9677542:9678131:1 11/11 None
GENEFINDER00000028830 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9677542:9678131:1 11/11 None
C03D6.8.2 ENSEMBL cdna:known chromosome:CEL140:I:9677534:9678230:1 gene:C03D6.8 11/11 None
C03D6.8.1 ENSEMBL cdna:known chromosome:CEL140:I:9677536:9678230:1 gene:C03D6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9677472-9678062(+) 100.0 100.0
Public Domain and Genome References
Gene Title ribosomal protein
Gene Symbol rpl-24.2
Ensembl C03D6.8
Entrez Gene 172815 Entrez gene
SwissProt Q17606 EMBL-EBI
WormBase CE05202 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14518_AT 60S ribosomal protein L24, putative at
ATH1-121501:266822_AT 60S ribosomal protein L24, putative at
CANINE:1586153_AT similar to ribosomal protein L24-like cfa
CANINE_2:CFA.10278.1.A1_AT similar to ribosomal protein L24-like cfa
CANINE_2:CFAAFFX.24384.1.S1_S_AT similar to ribosomal protein L24-like cfa
DROSOPHILA_2:1633283_AT dm
DROSGENOME1:149687_AT dm
CHICKEN:GGA.7559.1.S1_AT similar to ribosomal protein L24-like; 60S ribosomal protein L30 isolog; my024 protein; homolog of yeast ribosomal like protein 24 gga
HG-U133B:222465_AT chromosome 15 open reading frame 15 hs
HG-U133_PLUS_2:222465_AT chromosome 15 open reading frame 15 hs
HG-U133A:217915_S_AT chromosome 15 open reading frame 15 hs
HG-FOCUS:217915_S_AT chromosome 15 open reading frame 15 hs
HG-U133_PLUS_2:217915_S_AT chromosome 15 open reading frame 15 hs
HG-U133A_2:217915_S_AT chromosome 15 open reading frame 15 hs
HU35KSUBA:AA214688_AT chromosome 15 open reading frame 15 hs
HU35KSUBB:RC_N33273_S_AT chromosome 15 open reading frame 15 hs
HU35KSUBC:RC_AA045365_AT chromosome 15 open reading frame 15 hs
U133_X3P:G9294748_3P_AT chromosome 15 open reading frame 15 hs
U133_X3P:G10047101_3P_A_AT chromosome 15 open reading frame 15 hs
HG-U95B:45801_AT chromosome 15 open reading frame 15 hs
MG-U74AV2:102387_AT cDNA sequence BC003885 mm
MOE430A:1424377_AT cDNA sequence BC003885 mm
MOUSE430A_2:1424377_AT cDNA sequence BC003885 mm
MOUSE430_2:1424377_AT cDNA sequence BC003885 mm
MU19KSUBB:TC32787_AT CDNA sequence BC003885, mRNA (cDNA clone MGC:6735 IMAGE:3590401) mm
MU19KSUBC:TC37738_AT CDNA sequence BC003885, mRNA (cDNA clone MGC:6735 IMAGE:3590401) mm
RAE230B:1395449_AT Similar to ribosomal protein L24-like; 60S ribosomal protein L30 isolog; my024 protein; homolog of yeast ribosomal like protein 24 (predicted) rn
RAT230_2:1395449_AT Similar to ribosomal protein L24-like; 60S ribosomal protein L30 isolog; my024 protein; homolog of yeast ribosomal like protein 24 (predicted) rn
YEAST_2:1772264_AT Ribosomal Like Protein 24 Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99764 Hypothetical protein C03D6.8 [Caenorhabditis elegans] ref|NP_492572.1| Ribosomal Protein, Large subunit family member (rpl-24.2) [Caenorhabditis elegans] sp|Q17606|RLP24_CAEEL Probable ribosome biogenesis protein RLP24 1.0E-67
blast CAE60152 Hypothetical protein CBG03702 [Caenorhabditis briggsae] 8.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR000988 EMBL-EBI Ribosomal protein L24E 1.2E-31
Sequence
Target Sequence 
>C. ELEGANS:189887_AT
tcccatctacccgggacacggaatccagtttgtcagaaacgatagcacagtgttcaaatt
ctgccgatccagatgtaacaaattgttcaagaagaagaagaacccaagaaagcttcgttt
caccaaggctgcgcgtcgtgctcgcggaaaggagcttatcaacgacgccacacagcttct
cgaacagcgcagagatgagcctgtcaagtatgaaagagccatgttccaaaagaccattga
agctgccaaaacgatttccgcattgaaaacaaaaagatatggtaacctgatcagaaaacg
tctgcaaccaggaaagattgtacagaagaagggactccttgcgaaggtcgacaagaaaat
gcatctcatccgtgctccagttgcaaacagagatggtgtcaagacaagggcggcagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCATCTACCCGGGACACGGAATC 681 595 45 Antisense
GGGACACGGAATCCAGTTTGTCAGA 514 493 57 Antisense
GTTCAAATTCTGCCGATCCAGATGT 364 445 96 Antisense
AGAAAGCTTCGTTTCACCAAGGCTG 481 71 151 Antisense
TGCGCGTCGTGCTCGCGGAAAGGAG 322 583 174 Antisense
AAAGGAGCTTATCAACGACGCCACA 551 117 192 Antisense
CACAGCTTCTCGAACAGCGCAGAGA 474 195 215 Antisense
AGCGCAGAGATGAGCCTGTCAAGTA 169 83 230 Antisense
GAAGGGACTCCTTGCGAAGGTCGAC 506 333 372 Antisense
CATCCGTGCTCCAGTTGCAAACAGA 271 211 411 Antisense
GGTGTCAAGACAAGGGCGGCAGCAA 507 499 439 Antisense
Sequence Source Affymetrix Proprietary Database