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[189886_at] protein phosphatase

Description C42C1.2 /REP_DB=WormBase Gene ID /WP=CE16908 /TR=O44973 /GB=AAB97544.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster 6grp_high1_10_10 > 14      4grp_high_8_8 > 26      6grp_total > 04      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 72.4
(2.2)
P 		39.5
(-3)
A 		47.1
(-1.8)
P 		77.8
(3)
P 		38
B 101.7
(3)
P 		75.4
(-0.5)
P 		56.5
(-3)
P 		58.7
(-2.7)
P 		45
C 90.3
(3)
P 		70.5
(0.4)
P 		43.9
(-3)
A 		57.1
(-1.3)
P 		46
avr 88.1
(3) 		61.8
(-1.1) 		49.2
(-3) 		64.5
(-0.6) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 101.7
(2.7)
P 		105.1
(3)
P 		26.2
(-3)
A 		70.6
(0.4)
P 		58.8
(-0.5)
P 		50.5
(-1.2)
P 		79
B 108
(3)
P 		72.1
(0.2)
P 		64.5
(-0.4)
P 		91.4
(1.7)
P 		82.2
(1)
P 		30.5
(-3)
M 		78
C 88
(3)
P 		87.8
(3)
P 		62.7
(0.2)
P 		34.1
(-3)
A 		66.9
(0.7)
P 		37.2
(-2.7)
P 		54
avr 99.2
(3) 		88.3
(1.9) 		51.1
(-1.8) 		65.4
(-0.4) 		69.3
(-0) 		39.4
(-3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26.3
(3)
P 		8.6
(-3)
A 		12.3
(-1.7)
P 		11.4
(-2.1)
P 		18
B 32.4
(3)
P 		18.6
(-1.2)
P 		13.1
(-2.8)
P 		12.5
(-3)
P 		20
C 29.9
(3)
P 		20.3
(0.2)
P 		15.3
(-1.3)
A 		9.6
(-3)
P 		20
avr 29.5
(3) 		15.8
(-1.5) 		13.6
(-2.2) 		11.2
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 18.7
(-0.5)
P 		37.4
(3)
P 		5.7
(-3)
A 		17.9
(-0.7)
P 		17.7
(-0.7)
P 		12.3
(-1.8)
P 		32
B 37.6
(3)
P 		24
(-0.1)
P 		15.7
(-2)
P 		24.2
(-0.1)
P 		33.4
(2)
P 		11.4
(-3)
M 		26
C 32.6
(3)
P 		26.8
(1.6)
P 		16
(-0.9)
P 		6.9
(-3)
A 		21.7
(0.5)
P 		12.5
(-1.7)
P 		26
avr 29.6
(3) 		29.4
(2.9) 		12.5
(-2.9) 		16.3
(-1.6) 		24.3
(1.2) 		12.1
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8969
Sequence Type Exemplar sequence
Representative Public ID C42C1.2 NCBI
Target Description C42C1.2 /REP_DB=WormBase Gene ID /WP=CE16908 /TR=O44973 /GB=AAB97544.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069928 NCBI Caenorhabditis elegans C42C1.2 (C42C1.2) mRNA, complete cds. 11/11 None
SNAP00000027932 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12265579:12267796:-1 11/11 None
GENEFINDER00000027953 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12265579:12268277:-1 11/11 None
C42C1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12265497:12268277:-1 gene:C42C1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12265584-12268283(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein phosphatase
Ensembl C42C1.2
Entrez Gene 183398 Entrez gene
SwissProt O44973 EMBL-EBI
WormBase CE36275 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591426_AT similar to protein phosphatase 1H (PP2C domain containing) cfa
CANINE:1586736_AT similar to protein phosphatase 1H (PP2C domain containing) cfa
CANINE_2:CFA.8046.1.A1_AT similar to protein phosphatase 1H (PP2C domain containing) cfa
CANINE_2:CFAAFFX.1452.1.S1_S_AT similar to protein phosphatase 1H (PP2C domain containing) cfa
DROSOPHILA_2:1632433_AT dm
DROSGENOME1:145489_AT dm
CHICKEN:GGAAFFX.6151.1.S1_AT similar to protein phosphatase 1H (PP2C domain containing) gga
HG-U95AV2:33358_AT protein phosphatase 1H (PP2C domain containing) hs
HU35KSUBB:RC_W87462_AT protein phosphatase 1H (PP2C domain containing) hs
U133_X3P:HS2.319562.1.S1_3P_X_AT protein phosphatase 1H (PP2C domain containing) hs
U133_X3P:HS.21894.1.S1_3P_X_AT protein phosphatase 1H (PP2C domain containing) hs
U133_X3P:HS.21894.1.S1_3P_A_AT protein phosphatase 1H (PP2C domain containing) hs
U133_X3P:HS.21894.0.S1_3P_X_AT protein phosphatase 1H (PP2C domain containing) hs
U133_X3P:HS.21894.0.S1_3P_AT protein phosphatase 1H (PP2C domain containing) hs
HG-U133A_2:212686_AT protein phosphatase 1H (PP2C domain containing) hs
HG-U133_PLUS_2:212686_AT protein phosphatase 1H (PP2C domain containing) hs
HG-U133A:212686_AT protein phosphatase 1H (PP2C domain containing) hs
HG-U133_PLUS_2:233911_S_AT protein phosphatase 1H (PP2C domain containing) hs
HG-U133B:233911_S_AT protein phosphatase 1H (PP2C domain containing) hs
U133_X3P:1558654_3P_AT Protein phosphatase 1H (PP2C domain containing) hs
HG-U133_PLUS_2:1558654_AT Protein phosphatase 1H (PP2C domain containing) hs
HG-U95B:46753_AT Protein phosphatase 1H (PP2C domain containing) hs
HG-U95C:64951_AT Protein phosphatase 1H (PP2C domain containing) hs
HG-U95D:88003_AT Protein phosphatase 1H (PP2C domain containing) hs
HU35KSUBB:RC_T67452_AT Protein phosphatase 1H (PP2C domain containing) hs
HU35KSUBD:RC_T65754_AT Protein phosphatase 1H (PP2C domain containing) hs
MG-U74BV2:164143_AT protein phosphatase 1H (PP2C domain containing) mm
MOE430B:1435510_AT protein phosphatase 1H (PP2C domain containing) mm
MOUSE430_2:1435510_AT protein phosphatase 1H (PP2C domain containing) mm
MG-U74BV2:105074_AT MKIAA1157 protein mm
MOE430B:1458018_AT MKIAA1157 protein mm
MOUSE430_2:1458018_AT MKIAA1157 protein mm
MOUSE430_2:1445299_AT MKIAA1157 protein mm
MOE430B:1445299_AT MKIAA1157 protein mm
RAE230B:1390954_AT protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAT230_2:1390954_AT protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAE230A:1375099_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAT230_2:1375099_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAE230A:1376060_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAT230_2:1376060_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAE230B:1384599_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAT230_2:1384599_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAE230B:1393712_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RAT230_2:1393712_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RG-U34B:RC_AI010178_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RG-U34B:RC_AI059060_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
RG-U34C:RC_AI230926_AT Protein phosphatase 1H (PP2C domain containing) (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8287 protein serine/threonine phosphatase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4722 protein serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_502329 C42C1.2 [Caenorhabditis elegans] gb|AAB97544.2| Hypothetical protein C42C1.2 [Caenorhabditis elegans] 0.0
blast CAE62211 Hypothetical protein CBG06262 [Caenorhabditis briggsae] 0.0
blast CAF96007 unnamed protein product [Tetraodon nigroviridis] 3.0E-82
blast CAF96007 unnamed protein product [Tetraodon nigroviridis] 1.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 0.54
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 0.0056
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 7.9E-12
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 0.54
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 8.0E-4
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 7.9E-12
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 0.54
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 0.0056
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 7.9E-12
Sequence
Target Sequence 
>C. ELEGANS:189886_AT
gatttgaaatctcgtgtgctttacagagactggtttatggatggatgggcagtgaaaaca
gtgaaagaatgtgatcttagaccatcattgatcagtgaaacttctcggaaaaaacgactt
ttgaatacaattggagtttcacgtggattcggagatcatcacttgttaactgttgatgag
agactgagtatcaaaccatttctatcagcagttcccgaaatttccgtcactaatctgcga
gatatgaataccctaaccgataaagacgtggtaatcgtggcatcagatggtctttgggat
gttctgagcaatgaggatgcaggattgattgtcagaagtacattaggatcaactgattct
gctgatccttctagatacacccaggcggcgcaggatcttgtggcagctgctcgagggcaa
caagcatctggaaatctgaagagatgggttatgaataccggtggacatgcgagctatgat
gatatcacagtatttgtgatcccattaaaatactgtgctgctccaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGAAATCTCGTGTGCTTTACA 415 427 1186 Antisense
GGAGTTTCACGTGGATTCGGAGATC 609 517 1318 Antisense
GGAGATCATCACTTGTTAACTGTTG 215 519 1336 Antisense
AAACCATTTCTATCAGCAGTTCCCG 635 125 1378 Antisense
AATTTCCGTCACTAATCTGCGAGAT 231 175 1404 Antisense
TCAACTGATTCTGCTGATCCTTCTA 199 631 1534 Antisense
TGATCCTTCTAGATACACCCAGGCG 369 565 1548 Antisense
GGCGCAGGATCTTGTGGCAGCTGCT 208 543 1572 Antisense
GCAGCTGCTCGAGGGCAACAAGCAT 445 313 1588 Antisense
GAATACCGGTGGACATGCGAGCTAT 18 327 1638 Antisense
TTAAAATACTGTGCTGCTCCACCAA 623 683 1690 Antisense
Sequence Source Affymetrix Proprietary Database