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[189885_at] transposase

Description T12B5.6 /REP_DB=WormBase Gene ID /WP=CE20064 /TR=Q9TZ30 /GB=AAC68936.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=mariner transposase
Cluster 6grp_total > 64      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 34.5
(-0.8)
P 		4.2
(-3)
A 		45.8
(0.1)
A 		85.1
(3)
A 		81
B 25
(-1.8)
A 		18.3
(-3)
A 		51.4
(3)
P 		44.4
(1.7)
A 		33
C 57.7
(3)
M 		41.7
(-2)
A 		41.9
(-1.9)
A 		38.5
(-3)
A 		19
avr 39.1
(0.1) 		21.4
(-3) 		46.4
(1.3) 		56
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 47.6
(0.4)
A 		46.9
(0.3)
P 		27.9
(-3)
A 		49.3
(0.7)
P 		50.3
(0.9)
P 		62.7
(3)
P 		35
B 4.5
(-3)
A 		56.6
(2.3)
P 		57
(2.3)
P 		51.2
(1.7)
A 		44.7
(1.1)
P 		63.9
(3)
M 		59
C 16.9
(-3)
A 		47.7
(-0.1)
P 		79.8
(3)
P 		43.4
(-0.5)
P 		38.7
(-0.9)
A 		49.7
(0.1)
P 		63
avr 23
(-3) 		50.4
(1.6) 		54.9
(2.3) 		48
(1.2) 		44.6
(0.6) 		58.8
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.6
(3)
P 		0.9
(-3)
A 		12
(2.7)
A 		12.5
(2.9)
A 		12
B 8
(-0.2)
A 		4.5
(-3)
A 		11.9
(3)
P 		9.5
(1.1)
A 		7
C 19.1
(3)
M 		12
(-0.4)
A 		14.6
(0.9)
A 		6.5
(-3)
A 		13
avr 13.2
(3) 		5.8
(-3) 		12.8
(2.7) 		9.5
(0) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.8
(-1.5)
A 		16.7
(3)
P 		6.1
(-3)
A 		12.5
(0.6)
P 		15.2
(2.2)
P 		15.3
(2.2)
P 		11
B 1.5
(-3)
A 		18.8
(1.7)
P 		13.8
(0.3)
P 		13.6
(0.3)
A 		18.2
(1.5)
P 		23.8
(3)
M 		22
C 6.3
(-3)
A 		14.6
(0.6)
P 		20.3
(3)
P 		8.7
(-2)
P 		12.5
(-0.3)
A 		16.6
(1.4)
P 		14
avr 5.5
(-3) 		16.7
(2.1) 		13.4
(0.6) 		11.6
(-0.2) 		15.3
(1.5) 		18.6
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189885_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8241
Sequence Type Exemplar sequence
Representative Public ID T12B5.6 NCBI
Target Description T12B5.6 /REP_DB=WormBase Gene ID /WP=CE20064 /TR=Q9TZ30 /GB=AAC68936.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=mariner transposase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064895(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064895 NCBI Caenorhabditis elegans T12B5.6 (transposase) mRNA, complete cds. 11/11 A 
T12B5.6 ENSEMBL cdna:known chromosome:CEL140:III:933572:936054:-1 gene:T12B5.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007710 1/11 Cross Hyb Matching Probes None
SNAP00000007696 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:933571-936054(-) 47.1 100.0
Public Domain and Genome References
Gene Title transposase
Ensembl T12B5.6
Entrez Gene 188445 Entrez gene
SwissProt Q9TZ30 EMBL-EBI
WormBase CE20064 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68936 Hypothetical protein T12B5.6 [Caenorhabditis elegans] ref|NP_497296.1| T12B5.6 [Caenorhabditis elegans] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast T32726 hypothetical protein C45H4.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.8E-62
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-4
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.1E-4
Sequence
Target Sequence 
>C. ELEGANS:189885_AT
gaactttacggaaaacagatgcgacattgttacaactttcattaagattttcaaagccga
aaaatgtattcacgtgcagcaaatagaacttagttacttttcatttgatgaagtccttac
gattctttcatggtttgatgctaaagtgctcaaaagtattgaattagatgggataaagtc
aattgaccaattcgaaagaataatccatttggagcattggaaaaatgctgaagaatttag
cattaatagtcgtagagttgagtgtacgaatgccattgtccattttttccatttcaaatg
cttttatatttacaaattggacgaattttcagcacataccgcgatacaaataagagatga
tcttttgagaagaagtacattccaaagttgcacgatatattttgtcagttcaaaaataaa
tccgatggaaattgcaaaagtatttaaatcggactatggcaatgaatttaatatcgaata
ttcaaatggtaacgacaaattcggtatttttcttgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTTACGGAAAACAGATGCGAC 601 349 1476 Antisense
AATGTATTCACGTGCAGCAAATAGA 561 163 1538 Antisense
AACTTAGTTACTTTTCATTTGATGA 452 137 1562 Antisense
TTTAGCATTAATAGTCGTAGAGTTG 459 671 1711 Antisense
GTTGAGTGTACGAATGCCATTGTCC 215 437 1732 Antisense
ATGCCATTGTCCATTTTTTCCATTT 178 41 1745 Antisense
GAATTTTCAGCACATACCGCGATAC 422 325 1798 Antisense
TTTTCAGCACATACCGCGATACAAA 578 675 1801 Antisense
AGTTGCACGATATATTTTGTCAGTT 181 65 1861 Antisense
AGTATTTAAATCGGACTATGGCAAT 392 61 1914 Antisense
GACAAATTCGGTATTTTTCTTGAAG 651 363 1969 Antisense
Sequence Source Affymetrix Proprietary Database