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[189884_at] actin-like protein

Description Y53F4B.22 /REP_DB=WormBase Gene ID /WP=CE25400 /TR=Q9NA98 /GB=CAB70110.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=actin-like protein
Cluster 6grp_high1_10_10 > 05      6grp_total > 13      4grp_total > 59      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 613.8
(1.4)
P 		699.3
(2.4)
P 		751.2
(3)
P 		237.9
(-3)
A 		513
B 608.6
(1)
P 		692.1
(2.1)
P 		761.2
(3)
P 		311.2
(-3)
A 		450
C 634.8
(0.6)
P 		855.8
(3)
P 		728.3
(1.6)
P 		295.2
(-3)
A 		561
avr 619.1
(1.3) 		749.1
(3) 		746.9
(3) 		281.4
(-3) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 554.4
(1.4)
M 		550.9
(1.3)
P 		520.4
(0.4)
P 		608.2
(3)
P 		501.8
(-0.2)
P 		409.4
(-3)
P 		199
B 710.1
(3)
P 		683.5
(2.3)
P 		625.4
(0.8)
P 		480.7
(-3)
P 		668.3
(1.9)
P 		488.7
(-2.8)
P 		229
C 723.3
(3)
P 		674.3
(1.8)
P 		577.7
(-0.6)
P 		674.9
(1.8)
M 		481.6
(-3)
P 		501.8
(-2.5)
P 		242
avr 662.6
(3) 		636.2
(2.2) 		574.5
(0.3) 		587.9
(0.7) 		550.6
(-0.4) 		466.6
(-3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 223.5
(3)
P 		151.8
(0.7)
P 		196.4
(2.1)
P 		34.8
(-3)
A 		189
B 194.1
(3)
P 		170.9
(1.9)
P 		176.4
(2.2)
P 		66.3
(-3)
A 		128
C 210.2
(1.7)
P 		246.1
(2.8)
P 		253.8
(3)
P 		49.8
(-3)
A 		204
avr 209.3
(3) 		189.6
(2.3) 		208.9
(3) 		50.3
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 102.2
(-2.8)
M 		195.9
(3)
P 		113.3
(-2.2)
P 		154.2
(0.4)
P 		151.4
(0.2)
P 		99.7
(-3)
P 		96
B 247.1
(2)
P 		227.5
(1.2)
P 		151.9
(-2)
P 		127.3
(-3)
P 		271.5
(3)
P 		182.3
(-0.7)
P 		144
C 268.1
(3)
P 		205.7
(0.2)
P 		147
(-2.5)
P 		135.7
(-3)
M 		155.9
(-2.1)
P 		168
(-1.5)
P 		132
avr 205.8
(2.7) 		209.7
(3) 		137.4
(-3) 		139.1
(-2.9) 		192.9
(1.6) 		150
(-2) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189884_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3241
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.22 NCBI
Target Description Y53F4B.22 /REP_DB=WormBase Gene ID /WP=CE25400 /TR=Q9NA98 /GB=CAB70110.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=actin-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064707(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064707 NCBI Caenorhabditis elegans Y53F4B.22 (Y53F4B.22) mRNA, complete cds. 11/11 None
SNAP00000043056 ENSEMBL cdna:SNAP chromosome:CEL140:II:15120199:15122953:1 11/11 None
GENEFINDER00000043119 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15120199:15122953:1 11/11 None
Y53F4B.22 ENSEMBL cdna:known chromosome:CEL140:II:15120189:15123235:1 gene:Y53F4B.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15120195-15122950(+) 99.82 100.0
Public Domain and Genome References
Gene Title actin-like protein
Ensembl Y53F4B.22
Entrez Gene 175162 Entrez gene
SwissProt Q9NA98 EMBL-EBI
WormBase CE35675 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1595024_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) cfa
CANINE:1582379_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) cfa
CANINE:1582378_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) cfa
CANINE_2:CFA.3652.1.S1_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) cfa
CANINE_2:CFAAFFX.15968.1.S1_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) cfa
DROSOPHILA_2:1639121_AT Actin-related protein 87C dm
DROSGENOME1:143687_AT Actin-related protein 87C dm
CHICKEN:GGAAFFX.11629.1.S1_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) gga
HG-U95AV2:40052_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133_PLUS_2:200720_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133A_2:200720_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-FOCUS:200720_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133A:200720_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133A:200721_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133A_2:200721_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133_PLUS_2:200721_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HU35KSUBD:RC_T33105_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HUGENEFL:Z14978_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HUGENEFL:X82206_S_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
U133_X3P:G13325058_3P_A_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
U133_X3P:HS.153961.0.S1_3P_A_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133_PLUS_2:236713_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U133B:236713_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HG-U95B:55242_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
HU35KSUBC:RC_W61303_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
U133_X3P:HS.57833.0.A1_3P_AT ARP1 actin-related protein 1 homolog A, centractin alpha (yeast) hs
MOE430A:1415873_A_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOUSE430_2:1415873_A_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOUSE430A_2:1415873_A_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MU11KSUBB:MSA.38466.0_S_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MU11KSUBB:MSA.10616.0_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MG-U74CV2:137232_R_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MG-U74AV2:160407_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MG-U74BV2:164930_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MG-U74CV2:170646_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MG-U74CV2:170006_I_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOE430B:1458696_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOUSE430_2:1458696_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOE430B:1459855_X_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOUSE430_2:1459855_X_AT ARP1 actin-related protein 1 homolog A (yeast) mm
MOUSE430A_2:1457970_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MOUSE430_2:1457970_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MOE430A:1457970_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU11KSUBB:W91599_RC_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU11KSUBB:MSA.22465.0_S_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MG-U74AV2:97714_R_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU19KSUBA:TC15203_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU19KSUBA:TC15203_G_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU19KSUBA:TC18382_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU19KSUBC:TC38675_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
MU11KSUBB:W41964_AT ARP1 actin-related protein 1 homolog A (yeast), mRNA (cDNA clone MGC:5816 IMAGE:3599656) mm
RG-U34B:RC_AA926303_AT ARP1 actin-related protein 1 homolog A (yeast) (predicted) rn
RAE230A:1371741_AT ARP1 actin-related protein 1 homolog A (yeast) (predicted) rn
RAT230_2:1371741_AT ARP1 actin-related protein 1 homolog A (yeast) (predicted) rn
RAE230B:1394438_AT ARP1 actin-related protein 1 homolog A (yeast) (predicted) rn
RAT230_2:1394438_AT ARP1 actin-related protein 1 homolog A (yeast) (predicted) rn
YEAST_2:1770841_AT Actin-related protein of the dynactin complex; required for spindle orientation and nuclear migration; putative ortholog of mammalian centractin Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
15629 actin cytoskeleton inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5200 structural constituent of cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB70110 Hypothetical protein Y53F4B.22 [Caenorhabditis elegans] ref|NP_497108.2| Y53F4B.22 [Caenorhabditis elegans] 0.0
blast CAE59713 Hypothetical protein CBG03145 [Caenorhabditis briggsae] 0.0
blast CAG31185 hypothetical protein [Gallus gallus] ref|NP_001007949.1| ARP1 actin-related protein 1 homolog A, centractin alpha [Gallus gallus] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR004000 EMBL-EBI Actin/actin-like 1.0E-126
Pfam IPR004000 EMBL-EBI Actin/actin-like 1.3E-121
Pfam IPR004000 EMBL-EBI Actin/actin-like 2.3E-38
Sequence
Target Sequence 
>C. ELEGANS:189884_AT
tggatttggcgggtcgcgatgtcaccgaatacctccgagtccttctgcgcagagaaggat
acgagttccacaggagcaatgagttcgaaattgtccgagagatgaaggagaacgcgtgct
atttggcgttggatccgacgaaagtggagaataattcagtgaaagtatcatcctacgctc
tgccagacaccacgaaaatcgaaatctccaactcattgttccgtgcgccggaagtgctct
tcaagccggatttgatcggaaccgagtggcctggaatggcacatgttgtcaatcaatcaa
ttatgaaatgtgacgtggatcttcgacaaactctgtacagcaacatcgtgctgagcggtg
gaacgacgttgttcaaaggattcggcgatcgtttgctgggagaaatgcgaaaaatcgcgc
ccgctgacggaaaaattcgaatttccgcgtcgcaggaacgaaattcgctcacatggatcg
gcggttcgattgtcgccagtttggacactttccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATTTGGCGGGTCGCGATGTCAC 678 549 557 Antisense
CGTGCTATTTGGCGTTGGATCCGAC 505 245 671 Antisense
ATTGTTCCGTGCGCCGGAAGTGCTC 672 1 771 Antisense
GGAAGTGCTCTTCAAGCCGGATTTG 401 531 786 Antisense
GATCGGAACCGAGTGGCCTGGAATG 677 417 810 Antisense
GACGTGGATCTTCGACAAACTCTGT 387 377 868 Antisense
AAGGATTCGGCGATCGTTTGCTGGG 37 159 932 Antisense
AAATCGCGCCCGCTGACGGAAAAAT 639 109 968 Antisense
TCGAATTTCCGCGTCGCAGGAACGA 545 599 993 Antisense
GATCGGCGGTTCGATTGTCGCCAGT 18 415 1032 Antisense
TGTCGCCAGTTTGGACACTTTCCGA 531 555 1047 Antisense
Sequence Source Affymetrix Proprietary Database