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[189881_at] chorion protein like

Description F53F4.1 /REP_DB=WormBase Gene ID /WP=CE10954 /TR=Q20726 /GB=CAB01210.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chorion protein like
Cluster 6grp_total > 27      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 54.1
(3)
P 		45.4
(1.7)
A 		14.5
(-3)
A 		42.5
(1.2)
A 		40
B 78
(3)
P 		28.9
(-3)
A 		29.3
(-3)
A 		66.3
(1.6)
M 		49
C 68.4
(2.6)
P 		24.4
(-3)
A 		38.6
(-1.2)
A 		71.9
(3)
P 		48
avr 66.8
(3) 		32.9
(-2.2) 		27.5
(-3) 		60.2
(2) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 52.3
(3)
A 		31.4
(0.4)
A 		5.6
(-2.8)
A 		17
(-1.4)
A 		26
(-0.3)
P 		4.4
(-3)
A 		48
B 47.1
(3)
M 		34.1
(-0.2)
A 		33.4
(-0.4)
A 		32
(-0.8)
A 		23
(-3)
A 		43.3
(2.1)
P 		24
C 53.2
(1.5)
P 		70.5
(3)
A 		3.2
(-3)
A 		9.1
(-2.5)
A 		9.7
(-2.4)
A 		29.2
(-0.7)
A 		67
avr 50.9
(3) 		45.3
(2.1) 		14.1
(-3) 		19.4
(-2.1) 		19.6
(-2.1) 		25.6
(-1.1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 19.7
(3)
P 		9.8
(-0.7)
A 		3.8
(-3)
A 		6.2
(-2.1)
A 		16
B 24.9
(3)
P 		7.1
(-2.9)
A 		6.8
(-3)
A 		14.1
(-0.6)
M 		18
C 22.7
(3)
P 		7
(-3)
A 		13.5
(-0.5)
A 		12.1
(-1.1)
P 		16
avr 22.4
(3) 		8
(-3) 		8
(-3) 		10.8
(-1.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 9.6
(2)
A 		11.2
(3)
A 		1.2
(-2.9)
A 		4.3
(-1.1)
A 		7.9
(1)
P 		1.1
(-3)
A 		10
B 16.4
(3)
M 		11.4
(-0.6)
A 		8.1
(-3)
A 		8.5
(-2.7)
A 		9.3
(-2.1)
A 		16.1
(2.8)
P 		8
C 19.7
(2.5)
P 		21.5
(3)
A 		0.8
(-3)
A 		1.8
(-2.7)
A 		3.2
(-2.3)
A 		9.8
(-0.4)
A 		21
avr 15.2
(3) 		14.7
(2.7) 		3.4
(-3) 		4.9
(-2.2) 		6.8
(-1.3) 		9
(-0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13329
Sequence Type Exemplar sequence
Representative Public ID F53F4.1 NCBI
Target Description F53F4.1 /REP_DB=WormBase Gene ID /WP=CE10954 /TR=Q20726 /GB=CAB01210.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=chorion protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073964(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073964 NCBI Caenorhabditis elegans F53F4.1 (F53F4.1) mRNA, complete cds. 11/11 None
SNAP00000012431 ENSEMBL cdna:SNAP chromosome:CEL140:V:13587495:13587961:1 11/11 None
GENEFINDER00000012458 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13587495:13587986:1 11/11 None
F53F4.1 ENSEMBL cdna:known chromosome:CEL140:V:13587495:13587961:1 gene:F53F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13587494-13587961(+) 100.0 100.0
Public Domain and Genome References
Gene Title chorion protein like
Ensembl F53F4.1
Entrez Gene 186174 Entrez gene
SwissProt Q20726 EMBL-EBI
WormBase CE10954 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506365.1 2 7-29,53-75
F53F4.1 2 7-29,53-75
SNAP00000012431 2 7-29,53-75
GENEFINDER00000012458 2 7-29,49-71
Sequence
Target Sequence 
>C. ELEGANS:189881_AT
ttctcctaattttgtcgacaatactttcattggcttctggtcaatatggagtctatccag
gaatgtatggtggagggtatggtggatatggttacggtggttatggtggatacggtaccg
gtctcggaatgtacaatggtcttgggtatggacttggtggagttggaggtcttggaggac
ttggtggtggctatgggatgtatagtccttatacaaattattggtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTAATTTTGTCGACAATACT 3 693 32 Antisense
GACAATACTTTCATTGGCTTCTGGT 434 363 48 Antisense
TGGCTTCTGGTCAATATGGAGTCTA 191 545 62 Antisense
GAATGTATGGTGGAGGGTATGGTGG 513 331 92 Antisense
TGGTGGATACGGTACCGGTCTCGGA 234 553 135 Antisense
GATACGGTACCGGTCTCGGAATGTA 168 419 140 Antisense
GGTCTCGGAATGTACAATGGTCTTG 438 503 151 Antisense
AATGGTCTTGGGTATGGACTTGGTG 582 161 166 Antisense
TGGGTATGGACTTGGTGGAGTTGGA 651 553 174 Antisense
GGTGGCTATGGGATGTATAGTCCTT 195 499 217 Antisense
AGTCCTTATACAAATTATTGGTGCA 314 61 235 Antisense
Sequence Source Affymetrix Proprietary Database