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[189880_at] Zinc finger protein

Description ZK546.5 /REP_DB=WormBase Gene ID /WP=CE02919 /TR=Q23521 /GB=AAA68738.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 61      4grp_high_8_8 > 18      6grp_highest_nonorm > 81      6grp_total > 0      4grp_total > 30      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 252.8
(3)
P 		193.3
(-0.8)
P 		158.3
(-3)
P 		216.9
(0.7)
P 		95
B 249.6
(2.8)
P 		189.7
(-0.1)
P 		129.4
(-3)
P 		254.2
(3)
P 		125
C 276.5
(3)
P 		198.3
(-2.1)
P 		184.7
(-3)
P 		213.4
(-1.1)
P 		92
avr 259.6
(3) 		193.8
(-0.9) 		157.5
(-3) 		228.2
(1.2) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 201.3
(-3)
P 		288.4
(3)
P 		223.8
(-1.5)
P 		255.1
(0.7)
P 		278.5
(2.3)
P 		271.2
(1.8)
P 		87
B 198.8
(-2.9)
P 		322.5
(1.2)
P 		240.9
(-1.5)
P 		196.3
(-3)
P 		375.8
(3)
P 		281.1
(-0.2)
P 		180
C 207
(-3)
P 		315.9
(1.7)
P 		250.1
(-1.1)
P 		233.3
(-1.9)
P 		239.5
(-1.6)
P 		345.9
(3)
P 		139
avr 202.4
(-3) 		308.9
(3) 		238.3
(-1) 		228.2
(-1.5) 		297.9
(2.4) 		299.4
(2.5) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 92
(3)
P 		42
(-2)
P 		41.4
(-2)
P 		31.7
(-3)
P 		60
B 79.6
(3)
P 		46.8
(-1)
P 		30
(-3)
P 		54.2
(-0.1)
P 		50
C 91.5
(3)
P 		57
(-0.7)
P 		64.4
(0.1)
P 		36
(-3)
P 		56
avr 87.7
(3) 		48.6
(-2) 		45.3
(-2.4) 		40.6
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 37.1
(-3)
P 		102.6
(3)
P 		48.7
(-1.9)
P 		64.7
(-0.5)
P 		84
(1.3)
P 		66
(-0.4)
P 		66
B 69.2
(-2)
P 		107.4
(0.3)
P 		58.5
(-2.6)
P 		52
(-3)
P 		152.7
(3)
P 		104.8
(0.1)
P 		101
C 76.7
(-0.4)
P 		96.4
(1.3)
P 		63.6
(-1.5)
P 		46.9
(-3)
P 		77.5
(-0.3)
P 		115.8
(3)
P 		69
avr 61
(-2.2) 		102.1
(2.7) 		56.9
(-2.7) 		54.5
(-3) 		104.7
(3) 		95.5
(1.9) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4264
Sequence Type Exemplar sequence
Representative Public ID ZK546.5 NCBI
Target Description ZK546.5 /REP_DB=WormBase Gene ID /WP=CE02919 /TR=Q23521 /GB=AAA68738.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062502 NCBI Caenorhabditis elegans ZK546.5 (ZK546.5) mRNA, complete cds. 11/11 None
SNAP00000034945 ENSEMBL cdna:SNAP chromosome:CEL140:II:4935803:4937914:1 11/11 None
GENEFINDER00000034954 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4935548:4938543:1 11/11 None
ZK546.5 ENSEMBL cdna:known chromosome:CEL140:II:4935548:4937941:1 gene:ZK546.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4935545-4937912(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger protein
Ensembl ZK546.5
Entrez Gene 173850 Entrez gene
SwissProt Q23521 EMBL-EBI
WormBase CE02919 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68738 Hypothetical protein ZK546.5 [Caenorhabditis elegans] ref|NP_494903.1| ZK546.5 [Caenorhabditis elegans] 0.0
blast CAE59004 Hypothetical protein CBG02280 [Caenorhabditis briggsae] 0.0
blast AAA68737 Hypothetical protein ZK546.4 [Caenorhabditis elegans] ref|NP_494904.1| ZK546.4 [Caenorhabditis elegans] 4.0E-73
Sequence
Target Sequence 
>C. ELEGANS:189880_AT
gacaatcgtccggagttcatcgaacatcgacgtcttcatattccaactcaacatgaagaa
gtcgttgttgaaagctccgaagatccgaatgatattccatctacatcccaagcaatgatt
ccagatgaggatgcaaatgaagcagcagaacaacacaacttcccacaaatgattcatgat
gagcatggaaatattcaagttctcttaccagaaggatatgatctcagagaaacttattat
atttacgatgagaatggaacgaaaattcaattggtcccattacaacaaccagatggaact
atcgatcatcatcacctcgttcctcaatttgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATCGTCCGGAGTTCATCGAAC 220 365 1339 Antisense
GTTCATCGAACATCGACGTCTTCAT 138 445 1353 Antisense
GTTGTTGAAAGCTCCGAAGATCCGA 686 437 1402 Antisense
GAATGATATTCCATCTACATCCCAA 34 331 1425 Antisense
TACATCCCAAGCAATGATTCCAGAT 69 645 1440 Antisense
AGCAGCAGAACAACACAACTTCCCA 282 77 1479 Antisense
ACAACACAACTTCCCACAAATGATT 247 113 1488 Antisense
ATTCAAGTTCTCTTACCAGAAGGAT 471 11 1531 Antisense
TTCAATTGGTCCCATTACAACAACC 548 683 1604 Antisense
GAACTATCGATCATCATCACCTCGT 105 351 1634 Antisense
ATCACCTCGTTCCTCAATTTGAAAT 142 27 1649 Antisense
Sequence Source Affymetrix Proprietary Database