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[189877_at]

Description R07G3.3 /REP_DB=WormBase Gene ID /WP=CE27197 /TR=Q09612 /GB=AAK31549.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=myosin heavy chain
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 56      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 84      6grp_total > 47      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 704.2
(3)
P 		468.6
(-0.9)
P 		424.5
(-1.6)
P 		337.4
(-3)
P 		367
B 711.9
(3)
P 		382.2
(-2.7)
P 		366.5
(-3)
P 		457.3
(-1.4)
P 		345
C 619.7
(3)
P 		399.8
(-3)
P 		466.3
(-1.2)
P 		485.9
(-0.7)
P 		220
avr 678.6
(3) 		416.9
(-3) 		419.1
(-2.9) 		426.9
(-2.8) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 606.1
(0)
P 		646.5
(0.5)
P 		353.8
(-3)
P 		494.1
(-1.3)
P 		356.4
(-3)
P 		853.7
(3)
P 		500
B 606.6
(0.7)
P 		516
(-0.8)
P 		446.4
(-1.9)
P 		440.9
(-2)
P 		380.5
(-3)
P 		750.2
(3)
P 		370
C 527.9
(-0.1)
P 		535.6
(0.1)
P 		551
(0.4)
P 		396.1
(-3)
P 		394.8
(-3)
P 		671.3
(3)
P 		277
avr 580.2
(0.2) 		566
(-0) 		450.4
(-1.8) 		443.7
(-2) 		377.2
(-3) 		758.4
(3) 		381
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 256.4
(3)
P 		101.7
(-1.5)
P 		111
(-1.2)
P 		49.4
(-3)
P 		207
B 227
(3)
P 		94.4
(-2.6)
P 		84.9
(-3)
P 		97.4
(-2.5)
P 		142
C 205.1
(3)
P 		114.9
(-1.4)
P 		162.5
(0.9)
P 		81.9
(-3)
P 		123
avr 229.5
(3) 		103.7
(-1.9) 		119.5
(-1.3) 		76.2
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 111.7
(-1.6)
P 		229.9
(3)
P 		77.1
(-3)
P 		125.3
(-1.1)
P 		107.6
(-1.8)
P 		207.9
(2.1)
P 		153
B 211.1
(0.6)
P 		171.8
(-0.8)
P 		108.4
(-3)
P 		116.8
(-2.7)
P 		154.6
(-1.4)
P 		279.7
(3)
P 		171
C 195.7
(1.8)
P 		163.4
(0.5)
P 		140.2
(-0.5)
P 		79.7
(-3)
P 		127.7
(-1)
P 		224.7
(3)
P 		145
avr 172.8
(0) 		188.4
(0.7) 		108.6
(-2.9) 		107.3
(-3) 		130
(-2) 		237.4
(3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4591
Sequence Type Exemplar sequence
Representative Public ID R07G3.3 NCBI
Target Description R07G3.3 /REP_DB=WormBase Gene ID /WP=CE27197 /TR=Q09612 /GB=AAK31549.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=myosin heavy chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171853(11), NM_171021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171853 NCBI Caenorhabditis elegans R07G3.3a (R07G3.3) mRNA, complete cds. 11/11 None
NM_171021 NCBI Caenorhabditis elegans R07G3.3b (R07G3.3) mRNA, complete cds. 11/11 None
SNAP00000041804 ENSEMBL cdna:SNAP chromosome:CEL140:II:7599581:7607759:1 11/11 None
GENEFINDER00000041811 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7605494:7607759:1 11/11 None
R07G3.3a ENSEMBL cdna:known chromosome:CEL140:II:7599579:7607931:1 gene:R07G3.3 11/11 None
R07G3.3b ENSEMBL cdna:known chromosome:CEL140:II:7599581:7607759:1 gene:R07G3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7599577-7607756(+) 96.98 100.0
Public Domain and Genome References
Ensembl R07G3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU87818 Hypothetical protein R07G3.3a [Caenorhabditis elegans] ref|NP_741024.3| R07G3.3a [Caenorhabditis elegans] 0.0
blast AAU87819 Hypothetical protein R07G3.3b [Caenorhabditis elegans] ref|NP_741023.2| R07G3.3b [Caenorhabditis elegans] 0.0
blast T16703 hypothetical protein R07G3.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 8.30000019073486
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 8.10000038146973
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 6.40000009536743
Sequence
Target Sequence 
>C. ELEGANS:189877_AT
gatgatgttgttgtcctatccgatggagatgatgaaccagcaaatgataatgatgaagag
agtctcaatgatattgatgacgacgatggtattgaggagatcgagatggttgaagaatca
aacaaccgtgatattgaagaagttctcggaggagaagactcgcaaccatcacttgatgat
caagatcgtgaggcagcttctgctgttgaagaggctgaagacgaagggcgtgatccatta
ggaactattgacgagccgagtgcacccgctgatcctactggtgccgctggtattggtagc
tctggaagaatgggccaagacgtgcagagagttcggcttccaacggggcttcgtgacgcc
gaaagagaggatcaatgttcgagcagtaatgaaacaaacgatgagcgaccagctgaacgt
ttaactgctcgcaatctcgctcgtatgcaacgtccaacccgtggagctaaaccaactcgt
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATGTTGTTGTCCTATCCGATG 90 411 5401 Antisense
GGAGGAGAAGACTCGCAACCATCAC 460 515 5548 Antisense
GATCGTGAGGCAGCTTCTGCTGTTG 17 419 5584 Antisense
GACGAAGGGCGTGATCCATTAGGAA 658 377 5620 Antisense
GAACTATTGACGAGCCGAGTGCACC 207 347 5642 Antisense
TGGTGCCGCTGGTATTGGTAGCTCT 139 553 5679 Antisense
AGACGTGCAGAGAGTTCGGCTTCCA 73 71 5718 Antisense
GGGGCTTCGTGACGCCGAAAGAGAG 600 495 5745 Antisense
GAGCGACCAGCTGAACGTTTAACTG 521 385 5803 Antisense
AACGTTTAACTGCTCGCAATCTCGC 118 143 5816 Antisense
ACCCGTGGAGCTAAACCAACTCGTG 97 57 5857 Antisense
Sequence Source Affymetrix Proprietary Database