[Home] | [Total List]

[189874_at] glycosyltransferase

Description C54C8.4 /REP_DB=WormBase Gene ID /WP=CE08967 /TR=O02232 /GB=CAB05466.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster 6grp_total > 90      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 46.7
(-2.9)
A 		286.1
(3)
P 		183.1
(0.5)
P 		42.7
(-3)
A 		243
B 4.6
(-3)
A 		289.5
(3)
P 		172.1
(0.5)
P 		5.4
(-3)
A 		285
C 22.3
(-3)
A 		324.7
(3)
P 		232.9
(1.2)
P 		39.8
(-2.7)
A 		302
avr 24.5
(-3) 		300.1
(3) 		196
(0.7) 		29.3
(-2.9) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 103.8
(1.4)
A 		44.8
(-1.6)
A 		70.8
(-0.3)
A 		134.2
(3)
P 		59.4
(-0.9)
P 		18.6
(-3)
A 		116
B 108.1
(3)
A 		75.2
(0.3)
A 		67.9
(-0.3)
A 		101.8
(2.5)
M 		102.5
(2.5)
M 		34.5
(-3)
A 		74
C 83.9
(1.7)
A 		30.2
(-2)
A 		37.1
(-1.5)
A 		101.8
(3)
P 		71.9
(0.9)
A 		16.3
(-3)
A 		86
avr 98.6
(2.1) 		50.1
(-1.2) 		58.6
(-0.6) 		112.6
(3) 		77.9
(0.7) 		23.1
(-3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 17
(-1.8)
A 		62.1
(3)
P 		47.9
(1.5)
P 		6.3
(-3)
A 		56
B 1.5
(-3)
A 		71.5
(3)
P 		39.9
(0.3)
P 		1.1
(-3)
A 		70
C 7.4
(-3)
A 		93.4
(3)
P 		81.2
(2.2)
P 		6.7
(-3)
A 		87
avr 8.6
(-2.7) 		75.7
(3) 		56.3
(1.4) 		4.7
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 19.1
(-0)
A 		15.9
(-0.7)
A 		15.4
(-0.8)
A 		34
(3)
P 		17.9
(-0.3)
P 		4.5
(-3)
A 		30
B 37.6
(2.2)
A 		25
(-0.5)
A 		16.5
(-2.2)
A 		27
(-0.1)
M 		41.6
(3)
M 		12.9
(-3)
A 		29
C 31.1
(3)
A 		9.2
(-2.1)
A 		9.4
(-2.1)
A 		20.5
(0.5)
P 		23.3
(1.2)
A 		5.5
(-3)
A 		26
avr 29.3
(3) 		16.7
(-0.5) 		13.8
(-1.3) 		27.2
(2.4) 		27.6
(2.5) 		7.6
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2490
Sequence Type Exemplar sequence
Representative Public ID C54C8.4 NCBI
Target Description C54C8.4 /REP_DB=WormBase Gene ID /WP=CE08967 /TR=O02232 /GB=CAB05466.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060758 NCBI Caenorhabditis elegans C54C8.4 (glycosyltransferase) mRNA, complete cds. 11/11 None
GENEFINDER00000034221 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12458450:12462885:1 11/11 None
C54C8.4 ENSEMBL cdna:known chromosome:CEL140:I:12458113:12460127:1 gene:C54C8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034208 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12458061-12460049(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosyltransferase
Ensembl C54C8.4
Entrez Gene 173112 Entrez gene
SwissProt O02232 EMBL-EBI
WormBase CE08967 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05466 Hypothetical protein C54C8.4 [Caenorhabditis elegans] ref|NP_493159.1| C54C8.4 [Caenorhabditis elegans] 0.0
blast CAB05467 Hypothetical protein C54C8.5 [Caenorhabditis elegans] ref|NP_493160.1| C54C8.5 [Caenorhabditis elegans] 1.0E-140
blast CAA15837 Hypothetical protein C47F8.4 [Caenorhabditis elegans] ref|NP_493114.1| C47F8.4 [Caenorhabditis elegans] 1.0E-113
blast AAC78192 Hypothetical protein F46F5.14 [Caenorhabditis elegans] ref|NP_493813.2| F46F5.14 [Caenorhabditis elegans] 4.0E-81
blast AAC19260 Hypothetical protein ZK1055.2 [Caenorhabditis elegans] ref|NP_504676.1| ZK1055.2 [Caenorhabditis elegans] 4.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 8.9E-126
Pfam IPR004988 EMBL-EBI Protein of unknown function DUF273 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493159.1 1 12-34
C54C8.4 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:189874_AT
gctgccgaatagctcacacggatcagaaaatggtgcactacatattttccttgccgaaaa
attgttcccgcacaatcaaatcgacattgacgtttgccgaatcgcttgggagaactcttg
gaatatcgttgaccaatttgcatacacacattgcatcagagcaatttttggcgcttcaat
cgattttgacaagattaggatcttaagaaagggcactggatttgctcgtgacgactggat
caccggcggcgtttggagtcctgagcgagattttatgctgcacggatggaagatgcgtca
acttgcgccgacacccgccggagttgtcaaggctggagcgatgagtgaattgatttggta
ttctccgtttttgggaagctttgatatggagaagtgcagcatgggaaacactacatggta
ctacaacccaagtttgattgcatcaagagaaactgtagaggtcgtgttgcagcaggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCCGAATAGCTCACACGGATCA 633 297 600 Antisense
TGGTGCACTACATATTTTCCTTGCC 397 553 630 Antisense
GTTCCCGCACAATCAAATCGACATT 1 443 663 Antisense
TGACGTTTGCCGAATCGCTTGGGAG 315 569 687 Antisense
GAGCAATTTTTGGCGCTTCAATCGA 688 389 758 Antisense
AAGGGCACTGGATTTGCTCGTGACG 697 159 808 Antisense
TGCTCGTGACGACTGGATCACCGGC 286 581 822 Antisense
CGGCGTTTGGAGTCCTGAGCGAGAT 619 239 846 Antisense
GGAAGATGCGTCAACTTGCGCCGAC 574 531 887 Antisense
CACCCGCCGGAGTTGTCAAGGCTGG 196 201 911 Antisense
GTAGAGGTCGTGTTGCAGCAGGAAG 691 455 1054 Antisense
Sequence Source Affymetrix Proprietary Database