[Home] | [Total List]

[189869_at]

Description F56C11.6 /REP_DB=WormBase Gene ID /WP=CE17905 /TR=O44977 /GB=AAB97558.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=carboxylesterases
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 97      6grp_total > 66      4grp_total > 17      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 767
1 2 3 4 range
A 467.4
(-3)
P 		704.1
(-1.1)
P 		632.8
(-1.6)
P 		1198.2
(3)
P 		731
B 431.4
(-3)
P 		640.3
(-1)
P 		620
(-1.2)
P 		1073.5
(3)
P 		642
C 468.9
(-3)
P 		590.9
(-1.9)
P 		582.4
(-2)
P 		1154
(3)
P 		685
avr 455.9
(-3) 		645.1
(-1.3) 		611.7
(-1.6) 		1141.9
(3) 		686

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1217
1 2 3 4 5 6 range
A 762.3
(-2.9)
P 		898.6
(-2)
P 		925.4
(-1.8)
P 		858.8
(-2.3)
P 		747.2
(-3)
P 		1656.9
(3)
P 		910
B 697.1
(-3)
P 		888
(-1.9)
P 		1247.2
(0)
P 		977.7
(-1.5)
P 		823.2
(-2.3)
P 		1787.7
(3)
P 		1091
C 674.2
(-3)
P 		790.7
(-2.4)
P 		906.3
(-1.9)
P 		966.8
(-1.6)
P 		694.9
(-2.9)
P 		1891.1
(3)
P 		1217
avr 711.2
(-3) 		859.1
(-2.2) 		1026.3
(-1.2) 		934.4
(-1.7) 		755.1
(-2.8) 		1778.6
(3) 		1067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 170.2
(1.6)
P 		152.8
(-3)
P 		165.4
(0.3)
P 		175.4
(3)
P 		23
B 137.6
(-3)
P 		158.1
(-1.7)
P 		143.7
(-2.6)
P 		228.8
(3)
P 		91
C 155.2
(-3)
P 		169.9
(-1.2)
P 		203
(3)
P 		194.6
(1.9)
P 		48
avr 154.3
(-3) 		160.3
(-2.2) 		170.7
(-0.8) 		199.6
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 140.5
(-3)
P 		319.6
(1.1)
P 		201.5
(-1.6)
P 		217.8
(-1.2)
P 		225.5
(-1.1)
P 		403.4
(3)
P 		263
B 242.5
(-3)
P 		295.6
(-2.2)
P 		302.9
(-2.1)
P 		259
(-2.8)
P 		334.5
(-1.7)
P 		666.6
(3)
P 		424
C 249.9
(-2.2)
P 		241.3
(-2.4)
P 		230.7
(-2.5)
P 		194.4
(-3)
P 		224.9
(-2.6)
P 		633.1
(3)
P 		439
avr 211
(-3) 		285.5
(-1.7) 		245
(-2.4) 		223.7
(-2.8) 		261.6
(-2.1) 		567.7
(3) 		357
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2556
Sequence Type Exemplar sequence
Representative Public ID F56C11.6 NCBI
Target Description F56C11.6 /REP_DB=WormBase Gene ID /WP=CE17905 /TR=O44977 /GB=AAB97558.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=carboxylesterases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058287(11), NM_182061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058287 NCBI Caenorhabditis elegans F56C11.6a (carboxylesterases) mRNA, complete cds. 11/11 None
NM_182061 NCBI Caenorhabditis elegans F56C11.6b (carboxylesterases) mRNA, complete cds. 11/11 None
SNAP00000010369 ENSEMBL cdna:SNAP chromosome:CEL140:I:173422:175932:1 11/11 None
GENEFINDER00000010378 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:173422:175932:1 11/11 None
F56C11.6a ENSEMBL cdna:known chromosome:CEL140:I:173412:175976:1 gene:F56C11.6 11/11 None
F56C11.6b ENSEMBL cdna:known chromosome:CEL140:I:173874:175932:1 gene:F56C11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:173421-175932(+) 100.0 100.0
Public Domain and Genome References
Ensembl F56C11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB97558 Hypothetical protein F56C11.6a [Caenorhabditis elegans] ref|NP_490688.1| F56C11.6a [Caenorhabditis elegans] 0.0
blast AAO38636 Hypothetical protein F56C11.6b [Caenorhabditis elegans] ref|NP_871861.1| F56C11.6b [Caenorhabditis elegans] 0.0
blast CAE74300 Hypothetical protein CBG22005 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:189869_AT
gccctcggtgccttatcgaaaaatccggaaggaattaaaaagttcatgggaagaatcttt
aaagaatgcgactatggagagcgtgctgacgatgtgctgcagatggtctacgacttttat
ttcaagggggtacatcccaaggatcatgagaagaatatgcatcagattgtgaagttcatt
ggagactattctatcaactatggtacataccgtctggctaacattatgacggatcttcaa
cacgatgtatacttctatcagtttgactatcataactctgcaggattcggagtgttccgg
tggcttcttccgtttttgggctccacacattgcacggaaatgagatatgtgctcggcaaa
ggaataatctcgaaattccgaccaaatgataatgataagaagatgcttcacgttatgaca
acttattttacaaattttgcaaaatatggaaaccctaatggagaaaaccaggagactgga
gaatggcaaaagcacgactcggcacacccgttccgccatttcaagattgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCTCGGTGCCTTATCGAAAAATC 683 283 1033 Antisense
GAGAGCGTGCTGACGATGTGCTGCA 366 393 1109 Antisense
ATGTGCTGCAGATGGTCTACGACTT 285 47 1124 Antisense
GGAGACTATTCTATCAACTATGGTA 126 519 1213 Antisense
GGTACATACCGTCTGGCTAACATTA 459 501 1234 Antisense
GACGGATCTTCAACACGATGTATAC 285 377 1260 Antisense
GGATTCGGAGTGTTCCGGTGGCTTC 207 509 1315 Antisense
GGCTCCACACATTGCACGGAAATGA 654 539 1351 Antisense
GATGCTTCACGTTATGACAACTTAT 539 411 1434 Antisense
GAATGGCAAAAGCACGACTCGGCAC 472 333 1513 Antisense
CCGTTCCGCCATTTCAAGATTGATC 109 265 1540 Antisense
Sequence Source Affymetrix Proprietary Database