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[189867_s_at] Zinc finger protein

Description C09G9.6 /REP_DB=WormBase Gene ID /WP=CE03005 /TR=Q17877 /GB=CAA90986.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster 6grp_total > 88      4grp_total > 42      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 14.2
(2.4)
A 		8.2
(-3)
A 		11.3
(-0.2)
A 		14.9
(3)
A 		7
B 10.9
(-3)
A 		62.1
(2.7)
A 		65.2
(3)
A 		26.6
(-1.3)
A 		54
C 13.6
(-2.6)
A 		73.2
(3)
A 		14
(-2.5)
A 		8.8
(-3)
A 		64
avr 12.9
(-3) 		47.8
(3) 		30.2
(-0) 		16.8
(-2.3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1136
1 2 3 4 5 6 range
A 63.9
(-2.7)
A 		10.8
(-3)
A 		24.7
(-2.9)
A 		49.8
(-2.8)
A 		542.4
(-0.2)
P 		1143.9
(3)
P 		1133
B 12.8
(-3)
A 		13.1
(-3)
A 		10.2
(-3)
A 		138.3
(-2.1)
A 		514.3
(0.4)
P 		909.8
(3)
P 		900
C 14.1
(-3)
A 		7.6
(-3)
A 		76.1
(-2.6)
A 		61.3
(-2.7)
A 		516.6
(0.3)
P 		942.2
(3)
P 		935
avr 30.3
(-2.9) 		10.5
(-3) 		37
(-2.8) 		83.1
(-2.6) 		524.4
(0.1) 		998.6
(3) 		988
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.2
(3)
A 		1.8
(-3)
A 		3
(-0.9)
A 		2.2
(-2.3)
A 		3
B 3.5
(-3)
A 		15.3
(3)
A 		15.1
(2.9)
A 		5.7
(-1.9)
A 		12
C 4.5
(-2.1)
A 		21
(3)
A 		4.9
(-2)
A 		1.5
(-3)
A 		20
avr 4.4
(-2.2) 		12.7
(3) 		7.7
(-0.1) 		3.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 11.8
(-2.8)
A 		3.8
(-3)
A 		5.4
(-3)
A 		12.6
(-2.8)
A 		163.7
(0.5)
P 		278.5
(3)
P 		275
B 4.5
(-3)
A 		4.4
(-3)
A 		2.5
(-3)
A 		36.6
(-2.4)
A 		208.9
(0.7)
P 		339.3
(3)
P 		337
C 5.2
(-2.9)
A 		2.3
(-3)
A 		19.4
(-2.7)
A 		12.3
(-2.8)
A 		167.2
(0.2)
P 		315.4
(3)
P 		313
avr 7.2
(-2.9) 		3.5
(-3) 		9.1
(-2.9) 		20.5
(-2.7) 		179.9
(0.4) 		311.1
(3) 		308
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8496
Sequence Type Exemplar sequence
Representative Public ID C09G9.6 NCBI
Target Description C09G9.6 /REP_DB=WormBase Gene ID /WP=CE03005 /TR=Q17877 /GB=CAA90986.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069141 NCBI Caenorhabditis elegans Oocyte MAturation defective family member (oma-1) (oma-1) mRNA, complete cds. 11/11 None
SNAP00000019238 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8889553:8890514:1 11/11 None
GENEFINDER00000019248 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8889553:8890514:1 11/11 None
C09G9.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:8888955:8890982:1 gene:C09G9.6 11/11 None
C09G9.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:8888958:8890982:1 gene:C09G9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8889073-8890520(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger protein
Gene Symbol oma-1
Ensembl C09G9.6
Entrez Gene 177703 Entrez gene
SwissProt Q17877 EMBL-EBI
WormBase CE03005 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90986 Hypothetical protein C09G9.6 [Caenorhabditis elegans] emb|CAA90977.1| Hypothetical protein C09G9.6 [Caenorhabditis elegans] ref|NP_501542.1| Oocyte MAturation defective family member (oma-1) [Caenorhabditis elegans] 0.0
blast CAA90986 Hypothetical protein C09G9.6 [Caenorhabditis elegans] emb|CAA90977.1| Hypothetical protein C09G9.6 [Caenorhabditis elegans] ref|NP_501542.1| Oocyte MAturation defective family member (oma-1) [Caenorhabditis elegans] 1.0E-148
blast CAE74060 Hypothetical protein CBG21712 [Caenorhabditis briggsae] 1.0E-129
blast AAC48268 Oocyte maturation defective protein 2 [Caenorhabditis elegans] ref|NP_505069.1| Oocyte MAturation defective family member (oma-2) [Caenorhabditis elegans] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 5.9E-12
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.4E-13
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.4E-13
Sequence
Target Sequence 
>C. ELEGANS:189867_S_AT
gactaatggtcgcattgcagctcccccgctttctgccattcagcatcctttagaaatgtt
tgccaggccatcaactccagatgagccagcggctaaattgccactaggaccaactcctgt
tagtactcgtggtccaagatatgagctaccaacgaaggaattgcatgacgcggaaggtgc
gatgacctatccaccgtctcgctggccattggatccatcgatgtttgctctagacgcttg
gaatatggcacatcggccagctagtccactcgattcgatggttttgggttccgctccaaa
tgctggctcgttcggaatgctcggaaagcaaaatactcctggaggagtttctggatattc
atctgctggatccacgccttctcaggatctcagttcttcgtcactcaatgcagcatccgc
agctgccgctgctgcatatttcgcaaattctgctgttgctcaatctcttctgatgaaatc
tgtcgcaactgatccaatgatgtcatgtaacggaccattctctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTAATGGTCGCATTGCAGCTCCC 526 373 654 Antisense
TTTCTGCCATTCAGCATCCTTTAGA 504 671 683 Antisense
AATGTTTGCCAGGCCATCAACTCCA 559 163 708 Antisense
GAGCCAGCGGCTAAATTGCCACTAG 384 385 736 Antisense
CAACTCCTGTTAGTACTCGTGGTCC 273 189 764 Antisense
CCAGCTAGTCCACTCGATTCGATGG 260 273 910 Antisense
AAATGCTGGCTCGTTCGGAATGCTC 65 119 951 Antisense
TTCGTCACTCAATGCAGCATCCGCA 540 693 1050 Antisense
GCCGCTGCTGCATATTTCGCAAATT 597 285 1078 Antisense
AAATTCTGCTGTTGCTCAATCTCTT 78 117 1098 Antisense
GTCATGTAACGGACCATTCTCTCCA 278 467 1155 Antisense
Sequence Source Affymetrix Proprietary Database