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[189863_at] lin-15a like protein

Description T25B9.8 /REP_DB=WormBase Gene ID /WP=CE28088 /TR=Q22771 /GB=CAA94379.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lin-15a like protein
Cluster 6grp_high1_10_10 > 85      6grp_total > 76      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 153.8
(-1.1)
P 		114.1
(-2.6)
A 		102.8
(-3)
A 		267.5
(3)
P 		165
B 162.7
(0.2)
P 		133.8
(-0.7)
A 		61.6
(-3)
A 		250.4
(3)
P 		189
C 341.6
(3)
P 		197.5
(-0.4)
A 		84.8
(-3)
A 		316.7
(2.4)
P 		257
avr 219.4
(1.2) 		148.5
(-1) 		83.1
(-3) 		278.2
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 153.3
(-2.6)
A 		153.4
(-2.6)
P 		206.8
(-1.6)
P 		465.3
(3)
P 		128.5
(-3)
P 		423.8
(2.3)
P 		337
B 119.6
(-3)
P 		180.8
(-1.5)
P 		233.6
(-0.3)
P 		142
(-2.5)
P 		350.1
(2.5)
P 		370
(3)
P 		250
C 167.1
(-2.2)
P 		139.5
(-2.8)
P 		208.5
(-1.3)
P 		225.4
(-1)
P 		128.7
(-3)
P 		415.9
(3)
P 		287
avr 146.7
(-3) 		157.9
(-2.7) 		216.3
(-1.4) 		277.6
(0.1) 		202.4
(-1.7) 		403.2
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 56
(3)
P 		24.8
(-3)
A 		26.9
(-2.6)
A 		39.2
(-0.2)
P 		31
B 51.9
(2.8)
P 		33
(-0.1)
A 		14.3
(-3)
A 		53.4
(3)
P 		39
C 113.1
(3)
P 		56.8
(-1)
A 		29.5
(-3)
A 		53.4
(-1.3)
P 		84
avr 73.7
(3) 		38.2
(-1.3) 		23.6
(-3) 		48.7
(0) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 28.3
(-3)
A 		54.6
(-1.2)
P 		45
(-1.9)
P 		118
(3)
P 		38.8
(-2.3)
P 		103.2
(2)
P 		90
B 41.6
(-2.8)
P 		60.2
(-1.7)
P 		56.7
(-1.9)
P 		37.6
(-3)
P 		142.3
(3)
P 		138
(2.8)
P 		105
C 61.9
(-1.8)
P 		42.6
(-2.9)
P 		53.1
(-2.3)
P 		45.3
(-2.8)
P 		41.6
(-3)
P 		139.2
(3)
P 		98
avr 43.9
(-3) 		52.5
(-2.4) 		51.6
(-2.4) 		67
(-1.3) 		74.2
(-0.8) 		126.8
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10187
Sequence Type Exemplar sequence
Representative Public ID T25B9.8 NCBI
Target Description T25B9.8 /REP_DB=WormBase Gene ID /WP=CE28088 /TR=Q22771 /GB=CAA94379.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=lin-15a like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069596
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000044123 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10766205:10768131:-1 None
NM_069596 NCBI Caenorhabditis elegans T25B9.8 (T25B9.8) mRNA, complete cds. A 
SNAP00000044116 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10766529:10768131:-1 None
T25B9.8 ENSEMBL cdna:known chromosome:CEL140:IV:10766529:10768283:-1 gene:T25B9.8 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10766556-10768045(-) 100.0 100.0
Public Domain and Genome References
Gene Title lin-15a like protein
Ensembl T25B9.8
Entrez Gene 177969 Entrez gene
SwissProt Q22771 EMBL-EBI
WormBase CE32940 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94379 Hypothetical protein T25B9.8 [Caenorhabditis elegans] ref|NP_501997.2| T25B9.8 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:189863_AT
aagtcactaattggctcgatagacaacggaaaatcatcacaaaaacgttcgaaatcgtcc
atccaactcacaacatttgaacatattcctggatatgtcaaatggccgtgtctggtgtgt
aatcaacaaatggaaatgaccaaggtccgttcagtcaataatacagatgcctacatcatg
atctacgtttgtgttatgaatgataagtacgatatggacaaagcaaaagagttggctcga
atgcaaagatttaaatgctgtgtatctcatttagatgaattgtatgaaagcgctcttcat
tttttgggagtcgtggatccagatattgatattcacacggataacgagaaaattgtgcaa
gcttatcatgcagtaaaaggcatcaaggattcaagatttgtgcagaaactagtattcgag
ggtagcaggaagcatattgtgcccttctgcaatacattgaagaactttttccaaaagtat
gcgcggaaaaattatgtgagtagcaaggccgcaaggattgtaagcattagcggcgcaaac
tttctctattctggcataattcatgaaattcgttcagatccgacaagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCACTAATTGGCTCGATAGACA 570 155 727 Antisense
ACGTTCGAAATCGTCCATCCAACTC 162 95 771 Antisense
GTCCATCCAACTCACAACATTTGAA 470 477 783 Antisense
GGATATGTCAAATGGCCGTGTCTGG 420 509 817 Antisense
TGGCCGTGTCTGGTGTGTAATCAAC 326 545 829 Antisense
ACCAAGGTCCGTTCAGTCAATAATA 107 41 865 Antisense
GATGCCTACATCATGATCTACGTTT 381 415 892 Antisense
GAGTAGCAAGGCCGCAAGGATTGTA 518 385 1224 Antisense
TTAGCGGCGCAAACTTTCTCTATTC 644 681 1253 Antisense
AACTTTCTCTATTCTGGCATAATTC 244 139 1264 Antisense
AATTCGTTCAGATCCGACAAGCAAC 676 175 1293 Antisense
Sequence Source Affymetrix Proprietary Database