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[189862_at]

Description T18H9.2 /REP_DB=WormBase Gene ID /WP=CE04971 /GEN=asp-2 /TR=Q22548 /GB=AAA83331.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 17      6grp_total > 32      4grp_total > 60      6grp_highest_sub > De      6grp_cgc > 60      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15734
1 2 3 4 range
A 12555
(2.5)
P 		12929.6
(2.6)
P 		13703.4
(3)
P 		743.7
(-3)
P 		12960
B 14357.4
(2.2)
P 		13621.9
(1.9)
P 		16473.4
(3)
P 		746.2
(-3)
P 		15727
C 12307.5
(2.5)
P 		13381.5
(3)
P 		12914.1
(2.8)
P 		739.8
(-3)
P 		12642
avr 13073.3
(2.4) 		13311
(2.5) 		14363.6
(3) 		743.2
(-3) 		13620

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9869
1 2 3 4 5 6 range
A 13056
(2.5)
P 		13593.4
(3)
P 		12128
(1.5)
P 		13388.3
(2.8)
P 		7542.9
(-3)
P 		7647.1
(-2.9)
P 		6051
B 11949
(3)
P 		10547
(1.5)
P 		10961.8
(2)
P 		10135.6
(1.1)
P 		8050
(-1)
P 		6169.8
(-3)
P 		5779
C 13408.4
(1.3)
P 		10534.7
(-0.6)
P 		16038.7
(3)
P 		11191.1
(-0.2)
P 		11306.3
(-0.1)
P 		6898
(-3)
P 		9141
avr 12804.5
(2.8) 		11558.4
(1.5) 		13042.8
(3) 		11571.7
(1.6) 		8966.4
(-1) 		6905
(-3) 		6138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4470
1 2 3 4 range
A 4571.3
(3)
P 		2806.7
(0.6)
P 		3582.3
(1.7)
P 		108.9
(-3)
P 		4462
B 4578.5
(3)
P 		3364.3
(1.4)
P 		3817.3
(2)
P 		159
(-3)
P 		4420
C 4074.1
(2.4)
P 		3847.3
(2.1)
P 		4501
(3)
P 		124.7
(-3)
P 		4376
avr 4408
(3) 		3339.4
(1.5) 		3966.9
(2.4) 		130.9
(-3) 		4277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3108
1 2 3 4 5 6 range
A 2406.8
(-1.9)
P 		4834.5
(3)
P 		2641.2
(-1.4)
P 		3395.6
(0.1)
P 		2276.1
(-2.2)
P 		1861.8
(-3)
P 		2973
B 4157.7
(3)
P 		3510.6
(0.9)
P 		2661.8
(-1.8)
P 		2684.6
(-1.8)
P 		3270.6
(0.1)
P 		2300.7
(-3)
P 		1857
C 4969.9
(3)
P 		3214.5
(-0.9)
P 		4082.1
(1)
P 		2250.5
(-3)
P 		3658.6
(0.1)
P 		2309.2
(-2.9)
P 		2719
avr 3844.8
(3) 		3853.2
(3) 		3128.4
(0.4) 		2776.9
(-0.8) 		3068.4
(0.2) 		2157.2
(-3) 		1696
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11293
Sequence Type Exemplar sequence
Representative Public ID T18H9.2 NCBI
Target Description T18H9.2 /REP_DB=WormBase Gene ID /WP=CE04971 /GEN=asp-2 /TR=Q22548 /GB=AAA83331.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072983(11), NM_182329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072983 NCBI Caenorhabditis elegans ASpartyl Protease family member (asp-2) (asp-2) mRNA, complete cds. 11/11 None
NM_182329 NCBI Caenorhabditis elegans ASpartyl Protease family member (asp-2) (asp-2) mRNA, complete cds. 11/11 None
SNAP00000040412 ENSEMBL cdna:SNAP chromosome:CEL140:V:9205664:9207230:1 11/11 None
GENEFINDER00000040419 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9205664:9207230:1 11/11 None
T18H9.2a ENSEMBL cdna:known chromosome:CEL140:V:9202265:9207286:1 gene:T18H9.2 11/11 None
T18H9.2b ENSEMBL cdna:known chromosome:CEL140:V:9205662:9207230:1 gene:T18H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9202264-9207230(+) 100.0 100.0
Public Domain and Genome References
Ensembl T18H9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO25989 Aspartyl protease protein 2, isoform a [Caenorhabditis elegans] ref|NP_505384.2| ASpartyl Protease family member (asp-2) [Caenorhabditis elegans] 0.0
blast T29692 hypothetical protein T18H9.2 - Caenorhabditis elegans 0.0
blast CAE72130 Hypothetical protein CBG19226 [Caenorhabditis briggsae] 0.0
blast AAO25990 Aspartyl protease protein 2, isoform b [Caenorhabditis elegans] ref|NP_872129.1| ASpartyl Protease family member (asp-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 1.8E-11
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 2.3E-81
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 2.3E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505384.2 1 210-229
NP_872129.1 1 5-24
T18H9.2a 1 210-229
T18H9.2b 1 5-24
SNAP00000040412 1 5-24
GENEFINDER00000040419 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:189862_AT
caaaaccttgttgatcttccacttttcaccgtcttccttgagcatgaaggagatcaaaac
ggagttcaaggaggagtctacacttatggaggaattgatacaaagaactgtggtccagtt
atcgcttatcaaccattgtcctctgccacttattaccaattcaagatgagtgctattgga
tctggaagctatcactctagcaagggatggcaagtcatctccgacaccggaacttctctc
atcggaggaccaaaggcctacgtttctgctattgctgacgctgttggagccacatggaga
gatgattacggtgtatacatccttccatgctctgcaaagatcaacactcttgatatcacc
attggaaaccaagtatacaatattgactcatccaacaccattattccactcggagatgga
agcaacaattgcatctacgccatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAACCTTGTTGATCTTCCACTTT 305 191 1570 Antisense
TTCACCGTCTTCCTTGAGCATGAAG 377 687 1594 Antisense
CTGTGGTCCAGTTATCGCTTATCAA 490 239 1677 Antisense
CCTCTGCCACTTATTACCAATTCAA 683 267 1709 Antisense
CCGGAACTTCTCTCATCGGAGGACC 104 263 1796 Antisense
GAGGACCAAAGGCCTACGTTTCTGC 3 399 1814 Antisense
ACGTTTCTGCTATTGCTGACGCTGT 622 93 1829 Antisense
CTGACGCTGTTGGAGCCACATGGAG 109 237 1844 Antisense
TACATCCTTCCATGCTCTGCAAAGA 368 643 1885 Antisense
ATCCAACACCATTATTCCACTCGGA 602 39 1959 Antisense
GCAACAATTGCATCTACGCCATCTT 386 319 1991 Antisense
Sequence Source Affymetrix Proprietary Database