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[189861_at]

Description K10B2.2 /REP_DB=WormBase Gene ID /WP=CE02009 /TR=SW:Q09991 /GB=AAA68259.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Carboxypeptidase
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 50      6grp_total > 25      4grp_total > 51      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1349
1 2 3 4 range
A 1039.6
(-0.4)
P 		1715.3
(3)
P 		1330.6
(1)
P 		537.3
(-3)
P 		1178
B 1307.1
(1.8)
P 		1552.2
(3)
P 		1463.5
(2.6)
P 		366.6
(-3)
P 		1186
C 1063.9
(0.2)
P 		1567.1
(3)
P 		1374.3
(1.9)
P 		481.4
(-3)
P 		1086
avr 1136.9
(0.5) 		1611.5
(3) 		1389.5
(1.8) 		461.8
(-3) 		1150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 585
1 2 3 4 5 6 range
A 785.1
(3)
P 		498.2
(-0.3)
P 		643.1
(1.4)
P 		422.6
(-1.2)
P 		268.1
(-3)
P 		297.9
(-2.7)
P 		517
B 842.5
(3)
P 		652.3
(1)
P 		604.7
(0.6)
P 		387.5
(-1.7)
P 		257.3
(-3)
P 		442.6
(-1.1)
P 		585
C 663
(3)
P 		628.3
(2.4)
P 		417.2
(-0.9)
P 		457.8
(-0.3)
P 		284.5
(-3)
P 		483.3
(0.2)
P 		379
avr 763.5
(3) 		592.9
(0.9) 		555
(0.5) 		422.6
(-1.1) 		270
(-3) 		407.9
(-1.3) 		494
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 378.5
(3)
P 		372.4
(2.9)
P 		347.8
(2.4)
P 		78.7
(-3)
P 		300
B 416.8
(3)
P 		383.4
(2.4)
P 		339.1
(1.6)
P 		78.1
(-3)
P 		339
C 352.2
(1.1)
P 		450.5
(2.6)
P 		479
(3)
P 		81.2
(-3)
P 		398
avr 382.5
(2.6) 		402.1
(3) 		388.6
(2.7) 		79.3
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 144.7
(1.1)
P 		177.2
(3)
P 		140
(0.9)
P 		107.2
(-1)
P 		80.9
(-2.5)
P 		72.5
(-3)
P 		105
B 293.2
(3)
P 		217.1
(0.6)
P 		146.9
(-1.6)
P 		102.6
(-3)
P 		104.5
(-2.9)
P 		165.1
(-1)
P 		191
C 245.7
(3)
P 		191.7
(0.9)
P 		106.2
(-2.4)
P 		92.1
(-3)
P 		92.1
(-3)
P 		161.8
(-0.3)
P 		154
avr 227.9
(3) 		195.3
(1.6) 		131
(-1.3) 		100.6
(-2.6) 		92.5
(-3) 		133.1
(-1.2) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189861_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4815
Sequence Type Exemplar sequence
Representative Public ID K10B2.2 NCBI
Target Description K10B2.2 /REP_DB=WormBase Gene ID /WP=CE02009 /TR=SW:Q09991 /GB=AAA68259.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062883(11), NM_182127(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062883 NCBI Caenorhabditis elegans K10B2.2a (Carboxypeptidase) mRNA, complete cds. 11/11 None
NM_182127 NCBI Caenorhabditis elegans K10B2.2b (Carboxypeptidase) mRNA, complete cds. 11/11 None
SNAP00000015732 ENSEMBL cdna:SNAP chromosome:CEL140:II:6366951:6368967:1 11/11 None
GENEFINDER00000015736 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6366951:6368967:1 11/11 None
K10B2.2a ENSEMBL cdna:known chromosome:CEL140:II:6366943:6369157:1 gene:K10B2.2 11/11 None
K10B2.2b ENSEMBL cdna:known chromosome:CEL140:II:6368063:6368967:1 gene:K10B2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6366947-6368964(+) 100.0 100.0
Public Domain and Genome References
Ensembl K10B2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68259 Hypothetical protein K10B2.2a [Caenorhabditis elegans] ref|NP_495284.1| K10B2.2a [Caenorhabditis elegans] sp|Q09991|YSS2_CAEEL Putative serine carboxypeptidase K10B2.2 precursor 0.0
blast CAE59304 Hypothetical protein CBG02639 [Caenorhabditis briggsae] 0.0
blast AAO38620 Hypothetical protein K10B2.2b [Caenorhabditis elegans] ref|NP_871927.1| K10B2.2b [Caenorhabditis elegans] 1.0E-116
blast AAA68259 Hypothetical protein K10B2.2a [Caenorhabditis elegans] ref|NP_495284.1| K10B2.2a [Caenorhabditis elegans] sp|Q09991|YSS2_CAEEL Putative serine carboxypeptidase K10B2.2 precursor 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 8.0E-61
Sequence
Target Sequence 
>C. ELEGANS:189861_AT
atagccgtcggattaccagcaagaaaacataatgcagctaccacagttccgctttgtgct
caaaccaataatacacatgtttatttgaatagagcggatgttcggaaaagtttgcacatt
ccaagttctcttccagcatgggaagagtgtagcgaccaagttggaaagaattatgtagta
acacatttcaatgtgattcccgaatttcagacaatgattgctgcaggaattaaaattctt
gtctacaatggagatgtggacactgcttgtaattcaatcatgaatcaacagtttttgaca
tcactcaacctgacagttcttggagaacaggagaaagtgaacgaggcttggcactactcc
ggccagactggaactgcagtagctgggtttcagaccaagttcgccggaaatgttgatttt
ttgaccgttcgtggaagtggccactttgtgcctgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGCCGTCGGATTACCAGCAAGAA 232 23 892 Antisense
CATAATGCAGCTACCACAGTTCCGC 52 215 919 Antisense
TTCCAAGTTCTCTTCCAGCATGGGA 119 701 1010 Antisense
GTGGACACTGCTTGTAATTCAATCA 334 491 1147 Antisense
GTTTTTGACATCACTCAACCTGACA 286 449 1182 Antisense
AGTGAACGAGGCTTGGCACTACTCC 96 59 1227 Antisense
ACTACTCCGGCCAGACTGGAACTGC 310 101 1244 Antisense
CTGGAACTGCAGTAGCTGGGTTTCA 635 239 1259 Antisense
CTGGGTTTCAGACCAAGTTCGCCGG 530 229 1274 Antisense
TTTTGACCGTTCGTGGAAGTGGCCA 653 675 1310 Antisense
GAAGTGGCCACTTTGTGCCTGAAGA 463 335 1325 Antisense
Sequence Source Affymetrix Proprietary Database