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[189860_s_at] transcription factor

Description ZK856.9 /REP_DB=WormBase Gene ID /WP=CE06666 /TR=Q23644 /GB=CAA94857.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=transcription factor
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 85      6grp_total > 79      4grp_total > 47      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 586
1 2 3 4 range
A 676.8
(3)
P 		308
(-3)
P 		369.2
(-2)
P 		315.5
(-2.9)
P 		369
B 894.1
(3)
P 		426.8
(-2.2)
P 		352.5
(-3)
P 		357.9
(-2.9)
P 		542
C 777.7
(3)
P 		526.7
(-0.9)
P 		400.5
(-2.8)
P 		388.7
(-3)
P 		389
avr 782.9
(3) 		420.5
(-2.1) 		374.1
(-2.7) 		354
(-3) 		429

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 663.4
(-1.4)
P 		730.6
(-0.4)
P 		552.7
(-3)
P 		651.3
(-1.6)
P 		829.3
(1)
P 		966
(3)
P 		413
B 699.2
(-0.5)
P 		735.9
(-0)
P 		496.8
(-3)
P 		616
(-1.5)
P 		718.1
(-0.2)
P 		975.7
(3)
P 		479
C 579.2
(-3)
P 		774.8
(-0.2)
P 		701
(-1.3)
P 		848.3
(0.8)
P 		602.8
(-2.7)
P 		1005.3
(3)
P 		426
avr 647.3
(-2) 		747.1
(-0.5) 		583.5
(-3) 		705.2
(-1.2) 		716.7
(-1) 		982.3
(3) 		399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 239
1 2 3 4 range
A 246.4
(3)
P 		66.9
(-2.4)
P 		96.5
(-1.5)
P 		46.2
(-3)
P 		200
B 285.1
(3)
P 		105.4
(-2.2)
P 		81.7
(-2.8)
P 		76.3
(-3)
P 		209
C 257.5
(3)
P 		151.4
(-0.3)
P 		139.6
(-0.7)
P 		65.5
(-3)
P 		192
avr 263
(3) 		107.9
(-1.6) 		105.9
(-1.7) 		62.7
(-3) 		200

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 122.3
(-2.9)
P 		259.8
(3)
P 		120.4
(-3)
P 		165.2
(-1.1)
P 		250.2
(2.6)
P 		235.2
(1.9)
P 		139
B 243.3
(0)
P 		244.9
(0.1)
P 		120.6
(-3)
P 		163.2
(-1.9)
P 		291.7
(1.2)
P 		363.8
(3)
P 		243
C 214.7
(-1.4)
P 		236.4
(-0.6)
P 		178.4
(-2.7)
P 		170.6
(-3)
P 		195
(-2.1)
P 		336.5
(3)
P 		166
avr 193.4
(-1.1) 		247
(0.7) 		139.8
(-3) 		166.3
(-2.1) 		245.6
(0.7) 		311.8
(3) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189860_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11937
Sequence Type Exemplar sequence
Representative Public ID ZK856.9 NCBI
Target Description ZK856.9 /REP_DB=WormBase Gene ID /WP=CE06666 /TR=Q23644 /GB=CAA94857.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073225(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073225 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-315) (tag-315) mRNA, complete cds. 11/11 None
SNAP00000036954 ENSEMBL cdna:SNAP chromosome:CEL140:V:10209407:10212920:-1 11/11 None
GENEFINDER00000036968 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10209407:10212920:-1 11/11 None
ZK856.13 ENSEMBL cdna:known chromosome:CEL140:V:10209199:10212925:-1 gene:ZK856.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10209406-10214703(-) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor
Gene Symbol tag-315
Ensembl ZK856.13
Entrez Gene 179419 Entrez gene
SwissProt Q95PV7 EMBL-EBI
WormBase CE29016 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259397_AT transcription factor-related at
CANINE_2:CFAAFFX.16768.1.S1_AT similar to General transcription factor 3C polypeptide 3 (Transcription factor IIIC-gamma subunit) (TF3C-gamma) (TFIIIC 102 kDa subunit) (TFIIIC102) cfa
DROSOPHILA_2:1632283_AT dm
DROSGENOME1:155090_AT dm
CHICKEN:GGA.4375.1.S1_AT general transcription factor IIIC, polypeptide 3, 102kDa gga
CHICKEN:GGAAFFX.11742.1.S1_S_AT general transcription factor IIIC, polypeptide 3, 102kDa gga
HG-U133_PLUS_2:218343_S_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U133A:218343_S_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-FOCUS:218343_S_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U133A_2:218343_S_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HU35KSUBB:RC_AA128548_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
U133_X3P:G6912397_3P_A_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
U133_X3P:HS2.90847.2.S1_3P_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
U133_X3P:HS2.382728.1.S1_3P_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
U133_X3P:HS.90847.0.S2_3P_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U133_PLUS_2:1555439_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U133_PLUS_2:1569058_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U133_PLUS_2:222604_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U133B:222604_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U95B:55602_AT general transcription factor IIIC, polypeptide 3, 102kDa hs
HG-U95D:77663_AT General transcription factor IIIC, polypeptide 3, 102kDa hs
HU35KSUBB:RC_T98262_AT General transcription factor IIIC, polypeptide 3, 102kDa hs
MG-U74BV2:114864_AT similar to General transcription factor 3C polypeptide 3 (Transcription factor IIIC-gamma subunit) (TF3C-gamma) (TFIIIC 102 kDa subunit) (TFIIIC102) mm
MOE430B:1454765_AT similar to General transcription factor 3C polypeptide 3 (Transcription factor IIIC-gamma subunit) (TF3C-gamma) (TFIIIC 102 kDa subunit) (TFIIIC102) mm
MOUSE430_2:1454765_AT similar to General transcription factor 3C polypeptide 3 (Transcription factor IIIC-gamma subunit) (TF3C-gamma) (TFIIIC 102 kDa subunit) (TFIIIC102) mm
Protein Similarities
Method ID Description E-Value
blast CAC70122 Hypothetical protein ZK856.13 [Caenorhabditis elegans] ref|NP_505626.1| Temporarily Assigned Gene name family member (tag-315) [Caenorhabditis elegans] 0.0
blast CAE64757 Hypothetical protein CBG09547 [Caenorhabditis briggsae] 0.0
blast CAG31298 hypothetical protein [Gallus gallus] ref|NP_001006515.1| general transcription factor IIIC, polypeptide 3, 102kDa [Gallus gallus] 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 0.18
Pfam IPR001440 EMBL-EBI TPR repeat 0.0028
Pfam IPR001440 EMBL-EBI TPR repeat 0.0043
Pfam IPR001440 EMBL-EBI TPR repeat 1.1E-4
Pfam IPR001440 EMBL-EBI TPR repeat 0.017
Pfam IPR001440 EMBL-EBI TPR repeat 0.017
Sequence
Target Sequence 
>C. ELEGANS:189860_S_AT
gcgatcctcaaaatggctcattctctgacgttctccaaaaacgccttttcaatgcaatga
actacgtattcgtcaactctcagaatgtctgctaccatcgatttatcatgagagcactcg
tcaaagctaaagataatcatgctcttcaagcgatttcaggcaataattcacttatcacgg
gaacataccgacatgcaatgggagagtatcttcgagtatgggtagccaataaacgaaatc
cactcatctgtatgctgcttgctctcactttcactcatatgtcttgtaagaaggatctct
caagtagacacctcatcggaatccgaggaattgcttttatgaagaagtattcaaaagcac
gggcttgccaacaagaagtcttttataacattgccagaatgttccatcaaatgtcgattc
tccctctcgccaaacatttttatgataaagtattggaggttgatccgccgtgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGATCCTCAAAATGGCTCATTCTC 594 289 3860 Antisense
CTCATTCTCTGACGTTCTCCAAAAA 476 229 3876 Antisense
GAACTACGTATTCGTCAACTCTCAG 482 349 3918 Antisense
GAATGTCTGCTACCATCGATTTATC 362 331 3942 Antisense
CATGCTCTTCAAGCGATTTCAGGCA 411 211 3997 Antisense
AGTATCTTCGAGTATGGGTAGCCAA 445 61 4064 Antisense
AAATCCACTCATCTGTATGCTGCTT 641 117 4095 Antisense
CTCACTTTCACTCATATGTCTTGTA 116 229 4123 Antisense
GGATCTCTCAAGTAGACACCTCATC 517 511 4152 Antisense
TTCCATCAAATGTCGATTCTCCCTC 608 699 4261 Antisense
TATTGGAGGTTGATCCGCCGTGTGT 330 663 4310 Antisense
Sequence Source Affymetrix Proprietary Database