[Home] | [Total List]

[189859_s_at] DNA binding protein

Description T08D10.1 /REP_DB=WormBase Gene ID /WP=CE03642 /TR=Q20858 /GB=CAA90639.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=DNA binding protein
Cluster 6grp_high1_10_10 > 65      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_total > 56      4grp_total > 21      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 293.6
(-0.7)
P 		311.9
(0.3)
P 		251.9
(-3)
P 		362
(3)
P 		110
B 323.8
(3)
P 		243.3
(-0.4)
P 		183
(-3)
P 		196.2
(-2.4)
P 		141
C 226.3
(-2.4)
P 		203
(-3)
P 		220.6
(-2.5)
P 		418.2
(3)
P 		215
avr 281.2
(0.5) 		252.7
(-1.1) 		218.5
(-3) 		325.5
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 246.5
(0.6)
P 		216.7
(-0.6)
P 		227.6
(-0.2)
P 		156.7
(-3)
P 		178.5
(-2.1)
P 		306
(3)
P 		149
B 200.2
(-1.5)
P 		209.5
(-1)
P 		232
(0.4)
P 		226.5
(0.1)
P 		176
(-3)
P 		275.1
(3)
P 		99
C 159.7
(-3)
P 		294.8
(3)
P 		250.5
(1)
P 		213.3
(-0.6)
A 		176.2
(-2.3)
P 		272.8
(2)
P 		135
avr 202.1
(-1.6) 		240.3
(0.5) 		236.7
(0.3) 		198.8
(-1.8) 		176.9
(-3) 		284.6
(3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 106.9
(3)
P 		67.7
(-1.4)
P 		65.8
(-1.6)
P 		53
(-3)
P 		54
B 103.3
(3)
P 		60.1
(-1.2)
P 		42.4
(-2.9)
P 		41.8
(-3)
P 		62
C 74.9
(2.4)
P 		58.4
(-3)
P 		76.9
(3)
P 		70.5
(0.9)
P 		19
avr 95
(3) 		62.1
(-1.9) 		61.7
(-2) 		55.1
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 45.4
(-2.1)
P 		77.1
(3)
P 		49.6
(-1.4)
P 		39.7
(-3)
P 		53.9
(-0.7)
P 		74.5
(2.6)
P 		37
B 69.7
(-1.3)
P 		69.7
(-1.3)
P 		56.3
(-3)
P 		60
(-2.5)
P 		71.5
(-1)
P 		102.6
(3)
P 		46
C 59.2
(-1)
P 		90
(2.8)
P 		63.8
(-0.4)
P 		42.9
(-3)
A 		57
(-1.3)
P 		91.3
(3)
P 		48
avr 58.1
(-1.5) 		78.9
(1.5) 		56.6
(-1.7) 		47.5
(-3) 		60.8
(-1.1) 		89.5
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189859_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16654
Sequence Type Exemplar sequence
Representative Public ID T08D10.1 NCBI
Target Description T08D10.1 /REP_DB=WormBase Gene ID /WP=CE03642 /TR=Q20858 /GB=CAA90639.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=DNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077598 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-295) (tag-295) mRNA, complete cds. 11/11 None
T08D10.1 ENSEMBL cdna:known chromosome:CEL140:X:11944350:11946755:-1 gene:T08D10.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039805 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039813 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11944524-11946723(-) 100.0 100.0
Public Domain and Genome References
Gene Title DNA binding protein
Gene Symbol tag-295
Ensembl T08D10.1
Entrez Gene 181368 Entrez gene
SwissProt Q20858 EMBL-EBI
WormBase CE03642 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90639 Hypothetical protein T08D10.1 [Caenorhabditis elegans] emb|CAA90612.1| Hypothetical protein T08D10.1 [Caenorhabditis elegans] ref|NP_509999.1| Temporarily Assigned Gene name family member (tag-295) [Caenorhabditis elegans] 0.0
blast CAE69400 Hypothetical protein CBG15536 [Caenorhabditis briggsae] 4.0E-62
blast CAH60767 Hypothetical protein Y53H1A.5 [Caenorhabditis elegans] ref|NP_001021787.1| Y53H1A.5 [Caenorhabditis elegans] 3.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001289 EMBL-EBI CCAAT-binding transcription factor, subunit B 4.4E-43
Sequence
Target Sequence 
>C. ELEGANS:189859_S_AT
ctcggcccagggatgaactaccagtactatctttcccaaacggaacagtacccaatgtag
aaatgattggtccaaaagtgcaacaacccatgctggtcaatccgaagcagttcaacagaa
ttatgcgaagacgtgagatgaggcaacagcttgaagccagtggacggctcccacttgctc
gccagaagtatctccacgaaagtcgtcatcttcatgcactaaaacgcaagagagggcttg
atgggcgttttgacaatacgaaaacagccgaatcgtcatcaatggtcagcagtacaacgt
ctcccagaaaattgaaacgccggaaccgcttacctggtgaagaaacttctgattcgtcct
caatagttctcccatcgccagttgaaattcaaccaaagggcgggatagtcaattcatcga
tgccgtcgacgtcgactggatacatcaataatggcatggatcatcaaacggattatatcg
agcatcagcaacccatgtctacctacgaccaatatcacgaccacgtccaatatatcgcgc
cggatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGCCCAGGGATGAACTACCAGT 182 229 836 Antisense
GTGCAACAACCCATGCTGGTCAATC 688 477 913 Antisense
GAAAGTCGTCATCTTCATGCACTAA 199 361 1033 Antisense
GAGAGGGCTTGATGGGCGTTTTGAC 158 395 1065 Antisense
ATGGTCAGCAGTACAACGTCTCCCA 212 51 1117 Antisense
GAAACTTCTGATTCGTCCTCAATAG 227 357 1177 Antisense
GTCAATTCATCGATGCCGTCGACGT 656 461 1243 Antisense
GTCGACGTCGACTGGATACATCAAT 161 475 1260 Antisense
TATATCGAGCATCAGCAACCCATGT 646 661 1309 Antisense
ACCCATGTCTACCTACGACCAATAT 227 91 1326 Antisense
CACGTCCAATATATCGCGCCGGATG 191 199 1357 Antisense
Sequence Source Affymetrix Proprietary Database