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[189855_at] zinc finger protein

Description F13A2.8 /REP_DB=WormBase Gene ID /WP=CE09369 /TR=O16890 /GB=AAB69901.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 55      4grp_total > 22      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 32.2
(0.8)
A 		4.1
(-3)
A 		13.7
(-1.7)
A 		48.5
(3)
A 		44
B 45.4
(3)
A 		4.5
(-3)
A 		14
(-1.6)
A 		37.4
(1.8)
A 		41
C 8
(-2.5)
A 		42.5
(3)
A 		5.2
(-3)
A 		8.4
(-2.5)
A 		37
avr 28.5
(2.1) 		17
(-1.2) 		11
(-3) 		31.4
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 5.4
(-3)
A 		9.9
(-2.5)
A 		8.7
(-2.6)
A 		11
(-2.4)
A 		13.6
(-2.1)
A 		57.4
(3)
A 		52
B 7.7
(-2.5)
A 		30.7
(0.5)
A 		49
(3)
A 		4.3
(-3)
A 		5.3
(-2.9)
A 		5.1
(-2.9)
A 		45
C 9.6
(-2.3)
A 		32.5
(3)
A 		6.8
(-3)
A 		12.8
(-1.6)
A 		10.1
(-2.2)
A 		23.4
(0.9)
A 		26
avr 7.6
(-3) 		24.4
(1.8) 		21.5
(1) 		9.4
(-2.5) 		9.7
(-2.4) 		28.6
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.7
(3)
A 		0.9
(-3)
A 		3.6
(-1.5)
A 		7.1
(0.4)
A 		11
B 14.5
(3)
A 		1.1
(-3)
A 		3.2
(-2.1)
A 		8
(0.1)
A 		13
C 2.6
(-2.3)
A 		12.2
(3)
A 		1.8
(-2.8)
A 		1.4
(-3)
A 		11
avr 9.6
(3) 		4.7
(-1.4) 		2.9
(-3) 		5.5
(-0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1
(-3)
A 		3.5
(-1.8)
A 		1.9
(-2.6)
A 		2.8
(-2.2)
A 		4.1
(-1.6)
A 		14
(3)
A 		13
B 2.7
(-2.1)
A 		10.2
(2.1)
A 		11.9
(3)
A 		1.1
(-3)
A 		2.2
(-2.4)
A 		1.9
(-2.6)
A 		11
C 3.6
(-1.6)
A 		9.9
(3)
A 		1.7
(-3)
A 		2.6
(-2.3)
A 		3.3
(-1.8)
A 		7.8
(1.5)
A 		8
avr 2.4
(-2.8) 		7.9
(3) 		5.2
(0.2) 		2.2
(-3) 		3.2
(-1.9) 		7.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15572
Sequence Type Exemplar sequence
Representative Public ID F13A2.8 NCBI
Target Description F13A2.8 /REP_DB=WormBase Gene ID /WP=CE09369 /TR=O16890 /GB=AAB69901.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071812 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-118) (nhr-118) mRNA, complete cds. 11/11 None
F13A2.8 ENSEMBL cdna:known chromosome:CEL140:V:4407633:4409143:1 gene:F13A2.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037902 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4407632-4409143(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-118
Ensembl F13A2.8
Entrez Gene 184398 Entrez gene
WormBase CE09369 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504213 Nuclear Hormone Receptor family member (nhr-118) [Caenorhabditis elegans] 1.0E-137
blast AAB69901 Nuclear hormone receptor family protein 118 [Caenorhabditis elegans] 1.0E-136
blast AAR11993 nuclear receptor NHR-100 [Caenorhabditis elegans] emb|CAB05126.3| Hypothetical protein C28D4.1 [Caenorhabditis elegans] ref|NP_501731.1| Nuclear Hormone Receptor family member (nhr-100) [Caenorhabditis elegans] 9.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.3E-8
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.6E-33
Sequence
Target Sequence 
>C. ELEGANS:189855_AT
ctacggaaccgtgtcctgcaatggttgtaaagggtttttcagaagaagtatatgggagaa
aagaacgtataaatgcagcttccacaatcaatgctcaattgagcacaagtaccgtaaccg
ctgtagagcatgccgactggaaaagtgttttcgtgctgggatggatgcttcagcaattcg
gaataaaagagccaaacgaaaatcacaacctgagtccccgtgtacggaagaaatcgaaaa
tcgagcgctgagctggcaaactgaagccataattgcgctgttaatgcagaagaatggtca
gacccacaataagttaagccaattcagtggagcgtcagagttcaatttctcgactagatc
attcgtcacattagaaacacttcatctgaatcgccaccaattaccaaatcggatttggct
cgagaatacgttaccagagtatcaaatgctggtccacgctgataagaatgtgctaatgag
cctatcgattttatcagtttgctggctgactagcgcttttgaatcctataaattcgaatg
tgatggtattctgtttgccgatgggagctggtttccaaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACGGAACCGTGTCCTGCAATGGT 13 223 96 Antisense
TGCAGCTTCCACAATCAATGCTCAA 594 577 169 Antisense
TGAGCACAAGTACCGTAACCGCTGT 414 569 195 Antisense
GTAACCGCTGTAGAGCATGCCGACT 604 461 209 Antisense
AATCGAGCGCTGAGCTGGCAAACTG 300 165 334 Antisense
GAGCGTCAGAGTTCAATTTCTCGAC 338 387 425 Antisense
TCTGAATCGCCACCAATTACCAAAT 588 607 480 Antisense
GTATCAAATGCTGGTCCACGCTGAT 543 453 534 Antisense
TTTGCTGGCTGACTAGCGCTTTTGA 475 663 593 Antisense
GATGGTATTCTGTTTGCCGATGGGA 683 407 637 Antisense
GCCGATGGGAGCTGGTTTCCAAGGG 324 283 652 Antisense
Sequence Source Affymetrix Proprietary Database