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[189852_at]

Description F26B1.2 /REP_DB=WormBase Gene ID /WP=CE09674 /TR=P91277 /GB=AAB37791.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 74      6grp_total > 47      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1134
1 2 3 4 range
A 1025.7
(-0.8)
P 		1559.4
(3)
P 		1532.2
(2.8)
P 		709.3
(-3)
P 		850
B 1258.3
(2.3)
P 		1334.2
(3)
P 		1227.8
(2.1)
P 		644.9
(-3)
P 		689
C 1123.5
(-0.2)
P 		1733.9
(3)
P 		1351
(1)
P 		599.7
(-3)
P 		1134
avr 1135.8
(0.3) 		1542.5
(3) 		1370.3
(1.8) 		651.3
(-3) 		891

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 785.7
(0.1)
P 		795.5
(0.3)
P 		572.1
(-3)
P 		698
(-1.2)
P 		645.9
(-1.9)
P 		984.5
(3)
P 		412
B 657.2
(0.2)
P 		686.2
(1.9)
P 		681.3
(1.6)
P 		601.5
(-3)
P 		666.7
(0.7)
P 		706.1
(3)
P 		105
C 776.4
(3)
P 		692.2
(-2.7)
P 		773.4
(2.8)
P 		688.2
(-3)
P 		702.9
(-2)
P 		701.4
(-2.1)
P 		88
avr 739.8
(0.4) 		724.6
(-0.2) 		675.6
(-2.4) 		662.6
(-3) 		671.8
(-2.6) 		797.3
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 373.5
(2.5)
P 		338.5
(1.7)
P 		400.5
(3)
P 		103.8
(-3)
P 		297
B 401.3
(3)
P 		329.5
(1.4)
P 		284.5
(0.3)
P 		137.4
(-3)
P 		264
C 371.9
(1.1)
P 		498.5
(3)
P 		470.9
(2.6)
P 		101.1
(-3)
P 		397
avr 382.2
(2.9) 		388.8
(3) 		385.3
(2.9) 		114.1
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 144.8
(-2.2)
P 		282.9
(3)
P 		124.6
(-3)
P 		177
(-1)
P 		194.9
(-0.3)
P 		239.7
(1.4)
P 		158
B 228.7
(0.7)
P 		228.4
(0.7)
P 		165.4
(-2.7)
P 		159.3
(-3)
P 		270.9
(3)
P 		263.3
(2.6)
P 		112
C 287.8
(3)
P 		211.2
(-0.1)
P 		196.8
(-0.7)
P 		138.4
(-3)
P 		227.4
(0.6)
P 		234.8
(0.9)
P 		149
avr 220.4
(1.3) 		240.8
(2.7) 		162.3
(-2.7) 		158.2
(-3) 		231.1
(2) 		245.9
(3) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1232
Sequence Type Exemplar sequence
Representative Public ID F26B1.2 NCBI
Target Description F26B1.2 /REP_DB=WormBase Gene ID /WP=CE09674 /TR=P91277 /GB=AAB37791.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059424(11), NM_170880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059424 NCBI Caenorhabditis elegans F26B1.2c (F26B1.2) mRNA, complete cds. 11/11 None
NM_170880 NCBI Caenorhabditis elegans F26B1.2a (F26B1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000041720 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6325852:6327867:1 11/11 None
SNAP00000041715 ENSEMBL cdna:SNAP chromosome:CEL140:I:6326182:6327867:1 10/11 None
F26B1.2c.3 ENSEMBL cdna:known chromosome:CEL140:I:6325387:6327867:1 gene:F26B1.2 11/11 None
F26B1.2a ENSEMBL cdna:known chromosome:CEL140:I:6325836:6331031:1 gene:F26B1.2 11/11 A 
F26B1.2c.1 ENSEMBL cdna:known chromosome:CEL140:I:6326155:6327867:1 gene:F26B1.2 11/11 None
F26B1.2c.4 ENSEMBL cdna:known chromosome:CEL140:I:6326174:6327867:1 gene:F26B1.2 11/11 None
F26B1.2c.2 ENSEMBL cdna:known chromosome:CEL140:I:6326179:6327867:1 gene:F26B1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172330 5 2 NM_059424 189852_at (11)
NM_170880 174113_at (11), 189852_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6325780-6327796(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26B1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_740869 F26B1.2a [Caenorhabditis elegans] gb|AAB37791.1| Hypothetical protein F26B1.2a [Caenorhabditis elegans] 1.0E-179
blast NP_740869 F26B1.2a [Caenorhabditis elegans] gb|AAB37791.1| Hypothetical protein F26B1.2a [Caenorhabditis elegans] 1.0E-177
blast NP_491825 F26B1.2c [Caenorhabditis elegans] gb|AAO12447.1| Hypothetical protein F26B1.2c [Caenorhabditis elegans] 1.0E-170
blast NP_740869 F26B1.2a [Caenorhabditis elegans] gb|AAB37791.1| Hypothetical protein F26B1.2a [Caenorhabditis elegans] 1.0E-170
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 1.9E-16
Pfam IPR004087 EMBL-EBI KH 1.6E-12
Pfam IPR004087 EMBL-EBI KH 1.0E-13
Pfam IPR004087 EMBL-EBI KH 1.9E-16
Pfam IPR004087 EMBL-EBI KH 1.6E-12
Pfam IPR004087 EMBL-EBI KH 1.0E-13
Pfam IPR004087 EMBL-EBI KH 1.9E-16
Pfam IPR004087 EMBL-EBI KH 1.6E-12
Pfam IPR004087 EMBL-EBI KH 1.0E-13
Pfam IPR004087 EMBL-EBI KH 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:189852_AT
caactatgatccttccaacatctctgattatggaggttttcccggaaacatgcctgcagg
tggaccaccaaacaatcgcggtccagcgccacaacgaggagggcaaggacctccaggtgg
accaagatcgtatggaggagctattacacaaggaggtggtcagagatccttcgaagccgg
cgatttccaacagttccgcggagggccaggacctgttccagggtacgctatgagtgctcc
aggatatcctccacaacaaggacaattcggtgctccaaacaatgctggttatggttatgg
gcctggtggcggaggaccagttactactgcgcaggtgacgattccatccgaccttggagg
taccatcatcggtcgtggcggagaacgtattgctcgcattcgtcaagagtctggagctca
gattactctcgaacaaagcaatggacaaccggaacgtatcataactatcaaggggacgga
acaacaaattcacagtgctcagtatcttcttcagcaatgtgtccgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTATGATCCTTCCAACATCTCT 165 189 639 Antisense
GGAAACATGCCTGCAGGTGGACCAC 330 527 682 Antisense
CCACCAAACAATCGCGGTCCAGCGC 254 273 703 Antisense
CAGGGTACGCTATGAGTGCTCCAGG 92 207 857 Antisense
GACAATTCGGTGCTCCAAACAATGC 480 363 899 Antisense
GGCGGAGGACCAGTTACTACTGCGC 286 539 946 Antisense
ACTACTGCGCAGGTGACGATTCCAT 660 101 961 Antisense
GATTCCATCCGACCTTGGAGGTACC 231 425 978 Antisense
GAACGTATTGCTCGCATTCGTCAAG 464 347 1021 Antisense
TTCACAGTGCTCAGTATCTTCTTCA 301 687 1127 Antisense
ATCTTCTTCAGCAATGTGTCCGCAA 657 29 1142 Antisense
Sequence Source Affymetrix Proprietary Database