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[189850_at] homeobox protien

Description C33D12.7 /REP_DB=WormBase Gene ID /WP=CE06909 /GEN=ceh-30 /GB=AAK39201.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=homeobox protien
Cluster 6grp_total > 34      4grp_total > 26      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 7.3
(-3)
A 		14.8
(-2.4)
A 		10.7
(-2.7)
A 		87.6
(3)
A 		80
B 9.9
(-3)
A 		65.4
(2.5)
A 		12.7
(-2.7)
A 		70.6
(3)
A 		61
C 23.2
(-1.6)
A 		69.2
(3)
A 		37.3
(-0.2)
A 		9.7
(-3)
A 		60
avr 13.5
(-3) 		49.8
(2.1) 		20.2
(-2.1) 		56
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 115
(3)
A 		75.3
(0.3)
A 		73.6
(0.2)
A 		48.6
(-1.5)
A 		26.9
(-3)
A 		34.3
(-2.5)
A 		88
B 94.2
(2.1)
A 		63.1
(0.2)
A 		109.4
(3)
A 		69.7
(0.6)
A 		10.3
(-3)
A 		43
(-1)
A 		99
C 49.3
(0.1)
A 		91.5
(3)
A 		40.4
(-0.6)
A 		16.1
(-2.3)
A 		5.4
(-3)
A 		22.6
(-1.8)
A 		86
avr 86.2
(3) 		76.6
(2.2) 		74.5
(2) 		44.8
(-0.5) 		14.2
(-3) 		33.3
(-1.4) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2.7
(-3)
A 		3.2
(-2.7)
A 		2.8
(-2.9)
A 		12.8
(3)
A 		10
B 3.2
(-2.9)
A 		16.1
(3)
A 		2.9
(-3)
A 		15.1
(2.5)
A 		13
C 7.7
(-1)
A 		19.9
(3)
A 		13
(0.7)
A 		1.6
(-3)
A 		18
avr 4.5
(-3) 		13.1
(3) 		6.2
(-1.8) 		9.8
(0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 21.2
(1.2)
A 		26.8
(3)
A 		16
(-0.5)
A 		12.3
(-1.7)
A 		8.1
(-3)
A 		8.4
(-2.9)
A 		19
B 32.8
(3)
A 		21
(0.5)
A 		26.6
(1.7)
A 		18.5
(0)
A 		4.2
(-3)
A 		16
(-0.5)
A 		29
C 18.3
(0.8)
A 		27.9
(3)
A 		10.3
(-1)
A 		3.2
(-2.7)
A 		1.7
(-3)
A 		7.6
(-1.6)
A 		26
avr 24.1
(2.7) 		25.2
(3) 		17.6
(0.8) 		11.3
(-1.1) 		4.7
(-3) 		10.7
(-1.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18277
Sequence Type Exemplar sequence
Representative Public ID C33D12.7 NCBI
Target Description C33D12.7 /REP_DB=WormBase Gene ID /WP=CE06909 /GEN=ceh-30 /GB=AAK39201.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=homeobox protien
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076123 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-30) (ceh-30) mRNA, complete cds. 11/11 None
SNAP00000019207 ENSEMBL cdna:SNAP chromosome:CEL140:X:3063697:3065352:1 11/11 None
GENEFINDER00000019209 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3063697:3065352:1 11/11 None
C33D12.7 ENSEMBL cdna:known chromosome:CEL140:X:3063443:3065352:1 gene:C33D12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3063442-3065352(+) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protien
Gene Symbol ceh-30
Ensembl C33D12.7
Entrez Gene 191620 Entrez gene
SwissProt Q22909 EMBL-EBI
WormBase CE06909 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30442.1.S1_AT similar to BarH-like 1 cfa
MOE430A:1418812_A_AT BarH-like 1 (Drosophila) mm
MOUSE430A_2:1418812_A_AT BarH-like 1 (Drosophila) mm
MOUSE430_2:1418812_A_AT BarH-like 1 (Drosophila) mm
MOUSE430A_2:1418811_AT BarH-like 1 (Drosophila) mm
MOE430A:1418811_AT BarH-like 1 (Drosophila) mm
MOUSE430_2:1418811_AT BarH-like 1 (Drosophila) mm
RAE230A:1387211_AT BarH-like 1 (Drosophila) rn
RAT230_2:1387211_AT BarH-like 1 (Drosophila) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39201 C.elegans homeobox protein 30 [Caenorhabditis elegans] ref|NP_508524.1| C.Elegans Homeobox family member (ceh-30) [Caenorhabditis elegans] sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 1.0E-118
blast AAK39201 C.elegans homeobox protein 30 [Caenorhabditis elegans] ref|NP_508524.1| C.Elegans Homeobox family member (ceh-30) [Caenorhabditis elegans] sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 2.0E-97
blast CAE68370 Hypothetical protein CBG14125 [Caenorhabditis briggsae] 5.0E-78
blast CAE68370 Hypothetical protein CBG14125 [Caenorhabditis briggsae] 8.0E-78
blast CAE68371 Hypothetical protein CBG14126 [Caenorhabditis briggsae] 2.0E-40
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.00000005862444E-25
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 2.00000003908296E-25
Pfam IPR001356 EMBL-EBI Homeobox 7.8E-30
Pfam IPR001356 EMBL-EBI Homeobox 7.8E-30
Sequence
Target Sequence 
>C. ELEGANS:189850_AT
tcaacttccccgtgcaacaaaatttcgtcttcttcttcattccgcatttctgacattctc
gagcaatccccaaacaattcatcccattcaaacgatcacgacccatcgccacaatcaatt
aaatctgatttttcaacttcgccaagagcaagcagccccggcggcgatcgaatgggtagt
ccaggcagttgcaaaaaatctcggaaggcaagaaccatcttcactgacaagcagttgcaa
gagttggagaatacatttgaaaagcaaaagtatctatcagtccaggacaggatggatttg
gcgcacagaatgggtctcactgatactcaagtcaagacgtggtaccaaaatagaagaaca
aaatggaagcgacaggcaacaagtggaatggatcttctatcggaacctggaaacctctcc
gcagttcagaacttgatcagaagcagtccatattgggccaactatatcacagccttacct
atgggcactcagctaccgatgatgggcctacccatgtctatgattgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTTCCCCGTGCAACAAAATTT 651 625 283 Antisense
TCATTCCGCATTTCTGACATTCTCG 304 619 319 Antisense
TCCCATTCAAACGATCACGACCCAT 410 595 364 Antisense
CAACTTCGCCAAGAGCAAGCAGCCC 631 187 416 Antisense
AGAACCATCTTCACTGACAAGCAGT 646 73 493 Antisense
AATGGGTCTCACTGATACTCAAGTC 530 163 591 Antisense
TATCGGAACCTGGAAACCTCTCCGC 38 659 680 Antisense
GGGCCAACTATATCACAGCCTTACC 218 493 737 Antisense
GCCTTACCTATGGGCACTCAGCTAC 270 281 754 Antisense
ACTCAGCTACCGATGATGGGCCTAC 695 99 769 Antisense
GGCCTACCCATGTCTATGATTGTTC 394 543 787 Antisense
Sequence Source Affymetrix Proprietary Database