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[189844_at] uridine kinase like

Description B0001.4 /REP_DB=WormBase Gene ID /WP=CE05142 /TR=Q17413 /GB=CAA93453.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=uridine kinase like
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 97      6grp_total > 95      4grp_total > 59      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 882.1
(-1.7)
P 		1132.7
(3)
P 		977.5
(0.1)
P 		812.3
(-3)
P 		320
B 887.5
(1.7)
P 		858.1
(0.4)
P 		917.8
(3)
P 		781.9
(-3)
P 		136
C 984.8
(1.6)
P 		929.3
(0.1)
P 		1035.6
(3)
P 		815.4
(-3)
P 		220
avr 918.1
(1) 		973.4
(2.9) 		977
(3) 		803.2
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 897
(-1.1)
P 		895.7
(-1.1)
P 		737.3
(-3)
P 		1215.9
(2.6)
P 		1247.9
(3)
P 		1177.2
(2.2)
P 		511
B 719.7
(-3)
P 		840.8
(-1.8)
P 		767.7
(-2.5)
P 		1028.9
(0.1)
P 		1312.6
(3)
P 		1275.3
(2.6)
P 		593
C 798.7
(-2.8)
P 		779.9
(-3)
P 		951.4
(-1.4)
P 		976.9
(-1.2)
P 		1382.2
(2.5)
P 		1438.1
(3)
P 		658
avr 805.1
(-3) 		838.8
(-2.6) 		818.8
(-2.8) 		1073.9
(0.2) 		1314.2
(3) 		1296.9
(2.8) 		509
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 321.2
(3)
P 		245.9
(0.8)
P 		255.5
(1.1)
P 		118.9
(-3)
P 		202
B 283
(3)
P 		211.9
(-0.7)
P 		212.7
(-0.6)
P 		166.6
(-3)
P 		116
C 326
(2.1)
P 		267.2
(0.5)
P 		360.9
(3)
P 		137.5
(-3)
P 		223
avr 310.1
(3) 		241.7
(0.6) 		276.4
(1.8) 		141
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 165.4
(-2.9)
P 		318.6
(1.4)
P 		160.6
(-3)
P 		308.4
(1.1)
P 		376.6
(3)
P 		286.6
(0.5)
P 		216
B 250.4
(-1.9)
P 		279.9
(-1.4)
P 		186.4
(-3)
P 		272.5
(-1.5)
P 		533.3
(3)
P 		475.6
(2)
P 		347
C 296
(-0.9)
P 		238
(-2.1)
P 		242.1
(-2)
P 		196.5
(-3)
P 		447.3
(2.3)
P 		481.4
(3)
P 		285
avr 237.3
(-2) 		278.8
(-1.1) 		196.4
(-3) 		259.1
(-1.5) 		452.4
(3) 		414.5
(2.1) 		256
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9567
Sequence Type Exemplar sequence
Representative Public ID B0001.4 NCBI
Target Description B0001.4 /REP_DB=WormBase Gene ID /WP=CE05142 /TR=Q17413 /GB=CAA93453.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=uridine kinase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069903(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069903 NCBI Caenorhabditis elegans B0001.4 (B0001.4) mRNA, complete cds. 11/11 None
SNAP00000035710 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12135438:12137318:-1 11/11 None
GENEFINDER00000035717 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12135438:12137318:-1 11/11 None
B0001.4 ENSEMBL cdna:known chromosome:CEL140:IV:12135123:12137318:-1 gene:B0001.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12136131-12137324(-) 100.0 100.0
Public Domain and Genome References
Gene Title uridine kinase like
Ensembl B0001.4
Entrez Gene 178160 Entrez gene
SwissProt Q17413 EMBL-EBI
WormBase CE37307 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30459.1.S1_AT similar to uridine-cytidine kinase 1 cfa
HG-U133B:223141_AT uridine-cytidine kinase 1 hs
HG-U133_PLUS_2:223141_AT uridine-cytidine kinase 1 hs
HG-U133B:223142_S_AT uridine-cytidine kinase 1 hs
HG-U133_PLUS_2:223142_S_AT uridine-cytidine kinase 1 hs
HU35KSUBA:RC_AA488166_S_AT uridine-cytidine kinase 1 hs
HU35KSUBB:RC_T91185_AT uridine-cytidine kinase 1 hs
HU35KSUBD:RC_T53325_AT uridine-cytidine kinase 1 hs
U133_X3P:G13506764_3P_A_AT uridine-cytidine kinase 1 hs
U133_X3P:HS.9597.0.A2_3P_AT uridine-cytidine kinase 1 hs
HG-U95B:44319_AT uridine-cytidine kinase 1 hs
HG-U95B:51489_AT uridine-cytidine kinase 1 hs
HG-U95B:55683_AT uridine-cytidine kinase 1 hs
HG-U95E:92023_AT uridine-cytidine kinase 1 hs
HG-U95D:88090_AT Uridine-cytidine kinase 1 hs
HG-U95E:92025_AT Uridine-cytidine kinase 1 hs
MU11KSUBA:L31783_S_AT uridine-cytidine kinase 1 mm
MU11KSUBB:MSA.10301.0_F_AT uridine-cytidine kinase 1 mm
MG-U74AV2:94381_AT uridine-cytidine kinase 1 mm
MG-U74AV2:161167_R_AT uridine-cytidine kinase 1 mm
MG-U74CV2:167566_I_AT uridine-cytidine kinase 1 mm
MOE430A:1424399_AT uridine-cytidine kinase 1 mm
MOUSE430A_2:1424399_AT uridine-cytidine kinase 1 mm
MOUSE430_2:1424399_AT uridine-cytidine kinase 1 mm
RAE230A:1374312_AT Uridine-cytidine kinase 1 (predicted) rn
RAT230_2:1374312_AT Uridine-cytidine kinase 1 (predicted) rn
RAE230B:1379787_AT Uridine-cytidine kinase 1 (predicted) rn
RAT230_2:1379787_AT Uridine-cytidine kinase 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4849 uridine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8974 phosphoribulokinase activity inferred from electronic annotation QuickGO AmiGO
16301 kinase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93453 Hypothetical protein B0001.4 [Caenorhabditis elegans] ref|NP_502304.2| B0001.4 [Caenorhabditis elegans] sp|Q17413|UCK_CAEEL Probable uridine-cytidine kinase (UCK) (Uridine monophosphokinase) (Cytidine monophosphokinase) 1.0E-131
blast CAE62190 Hypothetical protein CBG06237 [Caenorhabditis briggsae] 1.0E-117
blast CAG33562 UCK1 [Homo sapiens] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 1.4E-26
Pfam IPR006083 EMBL-EBI Phosphoribulokinase/uridine kinase 6.9E-12
Sequence
Target Sequence 
>C. ELEGANS:189844_AT
atcgacattgtccacttgtcacttcactcattctacagagaactgtcagcagaagagaag
attcttgcgagagaaggaaaattcaatttcgatcatcctgatcagatcaactttgatctt
ctcgccgagactcttcaaaatatgattgatggaaaaactgtggaaattccaaagtacgat
atgatcacaagctctatgaacggaacagtgactgtggagccagcaaaagtgatcataatc
gaaggaatacttcttctttacgatgaacgtgttcgtaagctgctctccactaagcttttc
gttgagaaaaacgctgaaagccgtctcagaaaccggctggccacttatattcgtgactat
catcgtgctccgctctcgatcatccggcaatacacggagttcgtgaagcctgctttcgaa
gaattctgccgaccaaccaagaagtacgctgacgtcattattccacgtggagccgacaat
cacgtggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACATTGTCCACTTGTCACTTC 234 37 139 Antisense
TTGTCACTTCACTCATTCTACAGAG 186 707 154 Antisense
TGATCTTCTCGCCGAGACTCTTCAA 571 565 252 Antisense
TGAACGTGTTCGTAAGCTGCTCTCC 106 575 402 Antisense
TGCTCTCCACTAAGCTTTTCGTTGA 582 581 419 Antisense
GAAACCGGCTGGCCACTTATATTCG 261 359 467 Antisense
ATATTCGTGACTATCATCGTGCTCC 318 19 485 Antisense
CACGGAGTTCGTGAAGCCTGCTTTC 234 195 531 Antisense
CTGCCGACCAACCAAGAAGTACGCT 518 235 564 Antisense
AGTACGCTGACGTCATTATTCCACG 585 61 581 Antisense
GTGGAGCCGACAATCACGTGGCAAC 612 489 605 Antisense
Sequence Source Affymetrix Proprietary Database