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[189843_at]

Description B0412.1 /REP_DB=WormBase Gene ID /WP=CE26848 /TR=P90985 /GB=AAB52555.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=yeast NUD1 protein
Cluster 6grp_high1_10_10 > 54      6grp_total > 44      4grp_total > 52      6grp_cgc > 44      6grp_cgc_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 99.5
(-0.2)
P 		145.9
(3)
P 		80.1
(-1.5)
P 		59
(-3)
A 		87
B 115.1
(1.4)
P 		141.8
(3)
P 		101.7
(0.6)
P 		41.9
(-3)
A 		100
C 133.7
(3)
P 		107.8
(1.2)
P 		126.7
(2.5)
P 		46.7
(-3)
A 		87
avr 116.1
(1.9) 		131.8
(3) 		102.8
(0.9) 		49.2
(-3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 62.3
(-2.6)
A 		135.7
(1.8)
P 		155.4
(3)
P 		55.9
(-3)
M 		67.9
(-2.3)
P 		69
(-2.2)
A 		100
B 71.4
(-1.1)
P 		126.3
(1.8)
A 		148.5
(3)
P 		46.6
(-2.4)
P 		35
(-3)
A 		65
(-1.4)
P 		114
C 78
(-1)
A 		147.5
(3)
A 		124
(1.7)
M 		73.5
(-1.2)
A 		43
(-3)
M 		91.9
(-0.2)
P 		105
avr 70.6
(-1.6) 		136.5
(2.6) 		142.6
(3) 		58.7
(-2.4) 		48.6
(-3) 		75.3
(-1.3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 36.2
(3)
P 		31.7
(2)
P 		20.9
(-0.3)
P 		8.6
(-3)
A 		28
B 36.7
(3)
P 		35
(2.6)
P 		23.6
(0.2)
P 		8.9
(-3)
A 		28
C 44.3
(3)
P 		31
(0.8)
P 		44.2
(3)
P 		7.9
(-3)
A 		36
avr 39.1
(3) 		32.6
(1.7) 		29.6
(1.1) 		8.5
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.5
(-3)
A 		48.3
(3)
P 		33.8
(0.6)
P 		14.2
(-2.6)
M 		20.5
(-1.5)
P 		16.8
(-2.1)
A 		37
B 24.8
(-0.5)
P 		42
(3)
A 		36.1
(1.8)
P 		12.4
(-3)
P 		14.2
(-2.6)
A 		24.2
(-0.6)
P 		30
C 28.9
(-0.1)
A 		45
(3)
A 		31.6
(0.4)
M 		14.8
(-2.8)
A 		13.9
(-3)
M 		30.8
(0.3)
P 		31
avr 21.7
(-1.5) 		45.1
(3) 		33.8
(0.8) 		13.8
(-3) 		16.2
(-2.5) 		23.9
(-1.1) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189843_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8267
Sequence Type Exemplar sequence
Representative Public ID B0412.1 NCBI
Target Description B0412.1 /REP_DB=WormBase Gene ID /WP=CE26848 /TR=P90985 /GB=AAB52555.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=yeast NUD1 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025958(11), NM_001025959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025958 NCBI Caenorhabditis elegans DAChsund transcription factor homolog family member (dac-1) (dac-1) mRNA, complete cds. 11/11 None
NM_001025959 NCBI Caenorhabditis elegans DAChsund transcription factor homolog family member (dac-1) (dac-1) mRNA, complete cds. 11/11 None
GENEFINDER00000002847 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:813801:821633:1 11/11 None
B0412.1a ENSEMBL cdna:known chromosome:CEL140:III:816239:821633:1 gene:B0412.1 11/11 None
B0412.1b ENSEMBL cdna:known chromosome:CEL140:III:818301:821633:1 gene:B0412.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002846 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:818279-821633(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0412.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52555 Dachsund transcription factor homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021129.1| DAChsund transcription factor homolog family member (dac-1) [Caenorhabditis elegans] 0.0
blast AAB52555 Dachsund transcription factor homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021129.1| DAChsund transcription factor homolog family member (dac-1) [Caenorhabditis elegans] 1.0E-177
blast AAO61446 Dachsund transcription factor homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021130.1| DAChsund transcription factor homolog family member (dac-1) [Caenorhabditis elegans] 1.0E-154
blast AAB52555 Dachsund transcription factor homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021129.1| DAChsund transcription factor homolog family member (dac-1) [Caenorhabditis elegans] 1.0E-154
blast AAO61446 Dachsund transcription factor homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_001021130.1| DAChsund transcription factor homolog family member (dac-1) [Caenorhabditis elegans] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR003380 EMBL-EBI Transforming protein Ski 1.0E-45
Pfam IPR003380 EMBL-EBI Transforming protein Ski 1.3E-38
Pfam IPR003380 EMBL-EBI Transforming protein Ski 1.0E-45
Sequence
Target Sequence 
>C. ELEGANS:189843_AT
aatgcaaccgcaaatgacgcctcaacaaattttgatgcaacactttgttgcgctttctca
gaagacgaaaaatagttttgagagagcagatgatgatgatcaaaatcagagagacgctga
tgatataacgccattgaatctaagtaaaagtggaggaaattctgagaatgactcagattc
tttagaaaatatgagaaaagaagattcctcaccaaacacgtctgttagtgatcgtggtgg
ctccaactcaaattcattgtcaatgtcaatggaggctgggagtagtagtagtagtggcaa
aaacgatgaagcttctatgatgaataaagtaatgtccttaattgaacttgctagccaaca
gttcaagcatgaaagagaagagctatggaaagagcgaagcgaaatacaagttcttcgaga
gagttttcacaagattgtgcaagaagaacgcgatttgcgcaaaaagctcgaaactcagaa
caagaaatgcacggctttcgaaaaacgctacaaatatgtcaaaaaacaactattgctggc
gaatgcggacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCAACCGCAAATGACGCCTCAA 530 165 567 Antisense
GACGCCTCAACAAATTTTGATGCAA 360 381 582 Antisense
GCAACACTTTGTTGCGCTTTCTCAG 565 319 603 Antisense
GAGACGCTGATGATATAACGCCATT 581 393 677 Antisense
ATTCCTCACCAAACACGTCTGTTAG 139 9 770 Antisense
GATCGTGGTGGCTCCAACTCAAATT 521 413 796 Antisense
GTCAATGTCAATGGAGGCTGGGAGT 516 463 825 Antisense
ATGTCCTTAATTGAACTTGCTAGCC 118 49 898 Antisense
ACTTGCTAGCCAACAGTTCAAGCAT 234 105 912 Antisense
TGCACGGCTTTCGAAAAACGCTACA 549 575 1054 Antisense
AACTATTGCTGGCGAATGCGGACCT 639 139 1094 Antisense
Sequence Source Affymetrix Proprietary Database