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[189839_at]

Description C32A3.3 /REP_DB=WormBase Gene ID /WP=CE17487 /TR=Q93317 /GB=CAB03766.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=coiled coil domains
Cluster 4grp_high_8_8 > 39      6grp_total > 34      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 57.6
(-0.4)
P 		65.7
(0.7)
P 		38.5
(-3)
M 		82.8
(3)
P 		44
B 35.2
(-0.6)
P 		57.1
(3)
P 		25.5
(-2.2)
M 		20.5
(-3)
P 		37
C 50.2
(-0)
P 		26.1
(-3)
A 		65.4
(1.9)
P 		74.5
(3)
P 		48
avr 47.7
(-1.3) 		49.6
(-0.6) 		43.1
(-3) 		59.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 53.6
(2.7)
A 		54.9
(3)
P 		51.8
(2.4)
P 		24.9
(-3)
A 		45.3
(1.1)
P 		42.5
(0.5)
P 		30
B 69.4
(0.2)
P 		57.2
(-1.2)
P 		93.6
(3)
P 		55.9
(-1.3)
A 		43.3
(-2.8)
P 		41.5
(-3)
P 		52
C 94.1
(3)
P 		69.9
(0.2)
P 		43
(-3)
P 		52.9
(-1.8)
M 		45.6
(-2.7)
P 		44.9
(-2.8)
P 		51
avr 72.4
(3) 		60.7
(0.6) 		62.8
(1) 		44.6
(-2.7) 		44.7
(-2.7) 		43
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21
(3)
P 		14.3
(-0.7)
P 		10.1
(-3)
M 		12.1
(-1.9)
P 		11
B 11.2
(1.2)
P 		14.1
(3)
P 		5.9
(-2.1)
M 		4.4
(-3)
P 		10
C 16.6
(0.6)
P 		7.5
(-3)
A 		22.8
(3)
P 		12.6
(-1)
P 		15
avr 16.3
(3) 		12
(-0.9) 		12.9
(-0.1) 		9.7
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 9.9
(-1.4)
A 		19.5
(3)
P 		11.3
(-0.7)
P 		6.3
(-3)
A 		13.7
(0.4)
P 		10.3
(-1.2)
P 		13
B 24.1
(3)
P 		19
(-0.3)
P 		22.7
(2.1)
P 		14.8
(-3)
A 		17.6
(-1.2)
P 		15.5
(-2.5)
P 		9
C 34.9
(3)
P 		21.3
(-0.4)
P 		10.9
(-2.9)
P 		10.6
(-3)
M 		14.7
(-2)
P 		15
(-1.9)
P 		24
avr 23
(3) 		19.9
(1.5) 		15
(-0.9) 		10.6
(-3) 		15.3
(-0.7) 		13.6
(-1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6782
Sequence Type Exemplar sequence
Representative Public ID C32A3.3 NCBI
Target Description C32A3.3 /REP_DB=WormBase Gene ID /WP=CE17487 /TR=Q93317 /GB=CAB03766.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=coiled coil domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171100, NM_171101
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C32A3.3a.3 ENSEMBL cdna:known chromosome:CEL140:III:3636024:3643325:1 gene:C32A3.3 None
NM_171101 NCBI Caenorhabditis elegans C32A3.3b (C32A3.3) mRNA, complete cds. None
C32A3.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:3636123:3643637:1 gene:C32A3.3 None
C32A3.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:3636128:3643629:1 gene:C32A3.3 None
C32A3.3b ENSEMBL cdna:known chromosome:CEL140:III:3637462:3643325:1 gene:C32A3.3 None
NM_171100 NCBI Caenorhabditis elegans C32A3.3a (C32A3.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3636060-3642689(+) 100.0 100.0
Public Domain and Genome References
Ensembl C32A3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03766 Hypothetical protein C32A3.3a [Caenorhabditis elegans] emb|CAA88286.4| Hypothetical protein C32A3.3a [Caenorhabditis elegans] ref|NP_741113.3| C32A3.3a [Caenorhabditis elegans] 0.0
blast CAD44106 Hypothetical protein C32A3.3b [Caenorhabditis elegans] emb|CAD44100.2| Hypothetical protein C32A3.3b [Caenorhabditis elegans] ref|NP_741114.2| C32A3.3b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741113.3 1 394-416
NP_741114.2 1 385-407
C32A3.3a.3 1 394-416
C32A3.3a.1 1 394-416
C32A3.3a.2 1 394-416
C32A3.3b 1 385-407
Sequence
Target Sequence 
>C. ELEGANS:189839_AT
gctgattcgtcaaaacgaggagctattaaggaaaaatgcatcgcttcaaaagcaaggacg
aatgattgttgaagagaaaatggaagttgtaagaagattggaaaaaactgaagaatcgaa
tattgaattgaaaaagttggtgaaagaaacggatcgggcttgtaaggatatgcaattggc
taatcaggacaataacgaacctcgattcacgttaagcgaactacgagaagttataaaaga
gaagaatattctgaaaggacgagtaatggaattagaagaagaacttgataatttcaaacc
gggagccaaaaaagaaattatgagattggatgatgatgatgattttgatcggaatccatt
atattttacattttatccgaaaaataatttttttaaaccaaaaaacacaacattctgttc
taatttttggggcaaaaaacaaaaaaaaaacatttcttccgaaaattcgaaaaaaaaaaa
ccaaaaaacacaagtttccaaccaaatttgtcgatttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGATTCGTCAAAACGAGGAGCTA 680 293 720 Antisense
AGGAAAAATGCATCGCTTCAAAAGC 74 55 748 Antisense
GTGAAAGAAACGGATCGGGCTTGTA 451 481 859 Antisense
GGATCGGGCTTGTAAGGATATGCAA 86 513 870 Antisense
GGATATGCAATTGGCTAATCAGGAC 370 509 885 Antisense
GGACAATAACGAACCTCGATTCACG 194 525 906 Antisense
GAACCTCGATTCACGTTAAGCGAAC 673 343 916 Antisense
TGATAATTTCAAACCGGGAGCCAAA 528 561 1005 Antisense
GATCGGAATCCATTATATTTTACAT 133 419 1066 Antisense
CATTCTGTTCTAATTTTTGGGGCAA 368 217 1130 Antisense
TTCCAACCAAATTTGTCGATTTTTG 97 701 1215 Antisense
Sequence Source Affymetrix Proprietary Database