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[189831_at] phosphate permease

Description C48A7.2 /REP_DB=WormBase Gene ID /WP=CE20573 /TR=Q18697 /GB=AAB03157.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphate permease
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 30      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 642
1 2 3 4 range
A 971.4
(3)
P 		561.6
(-1.5)
P 		433.3
(-2.9)
P 		424.1
(-3)
P 		547
B 927.8
(3)
P 		603.6
(-0.7)
P 		503.3
(-1.8)
P 		395.1
(-3)
P 		533
C 892.2
(3)
P 		748.9
(1.5)
P 		517
(-1)
P 		329.2
(-3)
P 		563
avr 930.5
(3) 		638
(-0.2) 		484.5
(-1.9) 		382.8
(-3) 		548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1319
1 2 3 4 5 6 range
A 948.7
(2.8)
P 		960.9
(3)
P 		531.9
(-2.8)
P 		639.9
(-1.3)
P 		515.6
(-3)
P 		767.1
(0.4)
P 		445
B 870.9
(3)
P 		771.3
(1.6)
P 		445.4
(-3)
P 		686.4
(0.4)
P 		542.1
(-1.6)
P 		496.2
(-2.3)
P 		426
C 1764
(3)
P 		740.6
(-1.8)
P 		759.5
(-1.7)
P 		681
(-2.1)
P 		645.4
(-2.2)
P 		479.6
(-3)
P 		1284
avr 1194.5
(3) 		824.3
(-0.5) 		578.9
(-2.9) 		669.1
(-2) 		567.7
(-3) 		581
(-2.9) 		627
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 298
1 2 3 4 range
A 353.7
(3)
P 		121.9
(-1.8)
P 		113.3
(-1.9)
P 		62.1
(-3)
P 		292
B 295.9
(3)
P 		149.1
(-1.2)
P 		116.6
(-2.1)
P 		84.2
(-3)
P 		212
C 295.3
(3)
P 		215.3
(1)
P 		180.2
(0.1)
P 		55.5
(-3)
P 		240
avr 315
(3) 		162.1
(-0.7) 		136.7
(-1.3) 		67.3
(-3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 546
1 2 3 4 5 6 range
A 174.9
(-1.4)
P 		341.7
(3)
P 		115.8
(-3)
P 		162.3
(-1.8)
P 		155.6
(-1.9)
P 		186.8
(-1.1)
P 		226
B 303
(3)
P 		256.7
(1.6)
P 		108.2
(-3)
P 		181.8
(-0.7)
P 		220.3
(0.5)
P 		185
(-0.6)
P 		195
C 653.9
(3)
P 		226
(-2)
P 		193.3
(-2.3)
P 		137
(-3)
P 		208.8
(-2.2)
P 		160.5
(-2.7)
P 		517
avr 377.3
(3) 		274.8
(0.4) 		139.1
(-3) 		160.4
(-2.5) 		194.9
(-1.6) 		177.4
(-2) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9657
Sequence Type Exemplar sequence
Representative Public ID C48A7.2 NCBI
Target Description C48A7.2 /REP_DB=WormBase Gene ID /WP=CE20573 /TR=Q18697 /GB=AAB03157.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphate permease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068779 NCBI Caenorhabditis elegans C48A7.2 (C48A7.2) mRNA, complete cds. 11/11 None
SNAP00000006258 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7394068:7396710:1 11/11 None
GENEFINDER00000006295 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7394081:7396710:1 11/11 None
C48A7.2 ENSEMBL cdna:known chromosome:CEL140:IV:7393205:7397542:1 gene:C48A7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7394086-7396716(+) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate permease
Ensembl C48A7.2
Entrez Gene 177512 Entrez gene
SwissProt Q18697 EMBL-EBI
WormBase CE20573 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
30125 clathrin vesicle coat inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5315 inorganic phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03157 Hypothetical protein C48A7.2 [Caenorhabditis elegans] ref|NP_501180.1| C48A7.2 [Caenorhabditis elegans] 0.0
blast CAE61873 Hypothetical protein CBG05853 [Caenorhabditis briggsae] 0.0
blast NP_504823 F09G2.3 [Caenorhabditis elegans] gb|AAB71321.2| Hypothetical protein F09G2.3 [Caenorhabditis elegans] 1.0E-111
Protein Domains
Database ID Description E-Value
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Pfam IPR001204 EMBL-EBI Phosphate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501180.1 9 7-25,40-62,94-116,126-148,155-174,189-211,224-246,401-423,488-510
C48A7.2 9 7-25,40-62,94-116,126-148,155-174,189-211,224-246,401-423,488-510
SNAP00000006258 9 12-30,45-67,99-121,131-153,160-179,194-216,229-251,406-428,493-515
GENEFINDER00000006295 9 7-25,40-62,94-116,126-148,155-174,189-211,224-246,401-423,488-510
Sequence
Target Sequence 
>C. ELEGANS:189831_AT
caagcttcacgactgttttcacttcttcaagtgatgacggcctgcttcggaggatttgct
catggaggaaacgacgtgagtaatgcgattgctccacttgtttcgctttatctgattgct
aatgacggaatgaaatcggccgatatggaaacaccatggtaccttcttctctacggatcc
ttcggaatgtgtctcggtctctgggttctcggacatcgtgtcatctacactgtcggagaa
aatctaaccaagatcactccagcatctggattcgccgtcgagtttggagctgctgtcact
gttctgattgcttcaaagctcggacttcctatctcatcaacacaatgcaaagttggatcc
gtcgtggcagtcggtcttgttcaatccagacatcaagtccattggggagtattccggaac
atctcactatcctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCTTCACGACTGTTTTCACTTC 540 185 1054 Antisense
TAATGCGATTGCTCCACTTGTTTCG 294 635 1134 Antisense
GGAAACACCATGGTACCTTCTTCTC 585 527 1200 Antisense
GATCCTTCGGAATGTGTCTCGGTCT 484 413 1229 Antisense
GACATCGTGTCATCTACACTGTCGG 225 369 1265 Antisense
AACCAAGATCACTCCAGCATCTGGA 103 149 1299 Antisense
GAGTTTGGAGCTGCTGTCACTGTTC 275 399 1333 Antisense
TTCAAAGCTCGGACTTCCTATCTCA 131 687 1365 Antisense
CAAAGTTGGATCCGTCGTGGCAGTC 55 193 1401 Antisense
GCAGTCGGTCTTGTTCAATCCAGAC 489 311 1420 Antisense
TTCCGGAACATCTCACTATCCTGGA 481 697 1465 Antisense
Sequence Source Affymetrix Proprietary Database