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[189830_at] alpha-SNAP protein

Description D1014.3 /REP_DB=WormBase Gene ID /WP=CE27369 /TR=Q18921 /GB=AAA96287.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alpha-SNAP protein
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 47      6grp_total > 09      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1152
1 2 3 4 range
A 2606.9
(3)
P 		2480.8
(1.2)
P 		2469.6
(1)
P 		2192.4
(-3)
P 		415
B 2631.4
(-3)
P 		2795.1
(-1.5)
P 		2651.3
(-2.8)
P 		3265.9
(3)
P 		635
C 2827.3
(-0.3)
P 		2417.1
(-3)
P 		3106.2
(1.5)
P 		3344.5
(3)
P 		927
avr 2688.5
(-1) 		2564.3
(-3) 		2742.4
(-0.1) 		2934.3
(3) 		370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1204
1 2 3 4 5 6 range
A 3831.7
(3)
P 		3206.4
(-0.1)
P 		2875.6
(-1.8)
P 		3753.1
(2.6)
P 		2635.5
(-3)
P 		3308.3
(0.4)
P 		1196
B 3601.3
(3)
P 		2711.4
(-3)
P 		3200
(0.3)
P 		3077.5
(-0.5)
P 		3193.5
(0.3)
P 		3002.5
(-1)
P 		890
C 3017.6
(-0.2)
P 		2628.1
(-3)
P 		3158.1
(0.8)
P 		3465.3
(3)
P 		2872.2
(-1.3)
P 		3279.6
(1.7)
P 		837
avr 3483.5
(3) 		2848.6
(-3) 		3077.9
(-0.8) 		3432
(2.5) 		2900.4
(-2.5) 		3196.8
(0.3) 		635
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 762
1 2 3 4 range
A 949.2
(3)
P 		538.5
(-0.9)
P 		645.6
(0.1)
P 		320.9
(-3)
P 		628
B 839.1
(3)
P 		690.3
(-1)
P 		614.4
(-3)
P 		696
(-0.8)
P 		225
C 935.9
(1.3)
P 		694.9
(-1.5)
P 		1082.6
(3)
P 		563.9
(-3)
P 		519
avr 908.1
(3) 		641.2
(-1.2) 		780.9
(1) 		526.9
(-3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 706.3
(-2.1)
P 		1140.3
(3)
P 		626.2
(-3)
P 		951.9
(0.8)
P 		795.3
(-1)
P 		805.5
(-0.9)
P 		514
B 1253.1
(2.5)
P 		902.5
(-1.6)
P 		777
(-3)
P 		815.1
(-2.6)
P 		1297.5
(3)
P 		1119.6
(0.9)
P 		521
C 1118.5
(3)
P 		801.9
(-1.5)
P 		803.8
(-1.5)
P 		696.9
(-3)
P 		929.4
(0.3)
P 		1097.9
(2.7)
P 		422
avr 1026
(3) 		948.2
(1.4) 		735.7
(-3) 		821.3
(-1.2) 		1007.4
(2.6) 		1007.7
(2.6) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12460
Sequence Type Exemplar sequence
Representative Public ID D1014.3 NCBI
Target Description D1014.3 /REP_DB=WormBase Gene ID /WP=CE27369 /TR=Q18921 /GB=AAA96287.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=alpha-SNAP protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072698 NCBI Caenorhabditis elegans D1014.3 (D1014.3) mRNA, complete cds. 11/11 None
SNAP00000031800 ENSEMBL cdna:SNAP chromosome:CEL140:V:8133504:8135647:1 11/11 None
GENEFINDER00000031808 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8134309:8135647:1 11/11 None
D1014.3 ENSEMBL cdna:known chromosome:CEL140:V:8132956:8135920:1 gene:D1014.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8132956-8135648(+) 100.0 100.0
Public Domain and Genome References
Gene Title alpha-SNAP protein
Ensembl D1014.3
Entrez Gene 179193 Entrez gene
SwissProt Q18921 EMBL-EBI
WormBase CE38494 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17985_AT alpha-soluble NSF attachment protein 2 / alpha-SNAP2 / ASNAP2 at
ATH1-121501:251721_S_AT alpha-soluble NSF attachment protein 2 / alpha-SNAP2 / ASNAP2 at
CANINE:1602035_S_AT similar to N-ethylmaleimide sensitive fusion protein attachment protein alpha cfa
CANINE_2:CFA.14965.2.A1_S_AT similar to N-ethylmaleimide sensitive fusion protein attachment protein alpha cfa
CANINE_2:CFA.16753.1.S1_AT similar to N-ethylmaleimide sensitive fusion protein attachment protein alpha cfa
CANINE_2:CFAAFFX.7080.1.S1_S_AT similar to N-ethylmaleimide sensitive fusion protein attachment protein alpha cfa
DROSOPHILA_2:1632291_AT Soluble NSF attachment protein dm
DROSGENOME1:154026_AT Soluble NSF attachment protein dm
HG-U133_PLUS_2:206491_S_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133A:206491_S_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-FOCUS:206491_S_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133A_2:206491_S_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133_PLUS_2:208751_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133A_2:208751_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133A:208751_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HUGENEFL:U39412_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
U133_X3P:G12654654_3P_A_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U95AV2:36977_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
U133_X3P:HS.192179.0.A1_3P_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
U133_X3P:HS.181641.0.A1_3P_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133_PLUS_2:235934_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133B:235934_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133_PLUS_2:239362_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U133B:239362_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U95E:85042_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U95E:85885_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U95C:66680_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
HG-U95D:78534_AT N-ethylmaleimide-sensitive factor attachment protein, alpha hs
MOE430A:1416192_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MOUSE430_2:1416192_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MOUSE430A_2:1416192_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MOE430A:1448243_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MOUSE430A_2:1448243_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MOUSE430_2:1448243_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MU11KSUBB:W13304_S_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MU11KSUBB:MSA.6197.0_S_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MU11KSUBB:MSA.12915.0_F_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MU11KSUBB:MSA.12915.0_I_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MG-U74AV2:98887_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MG-U74CV2:130483_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha mm
MG-U74CV2:168354_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha, mRNA (cDNA clone MGC:6399 IMAGE:3584869) mm
MU19KSUBC:TC39162_S_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha, mRNA (cDNA clone MGC:6399 IMAGE:3584869) mm
RG-U34A:X89968_G_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha rn
RG-U34A:X89968_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha rn
RAE230A:1398782_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha rn
RAT230_2:1398782_AT N-ethylmaleimide sensitive fusion protein attachment protein alpha rn
YEAST_2:1770916_AT Peripheral membrane protein required for vesicular transport between ER and Golgi and for the 'priming' step in homotypic vacuole fusion, part of the cis-SNARE complex; has similarity to alpha-SNAP Sc
Protein Similarities
Method ID Description E-Value
blast CAE66122 Hypothetical protein CBG11346 [Caenorhabditis briggsae] 1.0E-160
blast NP_505099 D1014.3 [Caenorhabditis elegans] gb|AAA96287.3| Hypothetical protein D1014.3 [Caenorhabditis elegans] 1.0E-158
blast CAE66122 Hypothetical protein CBG11346 [Caenorhabditis briggsae] 1.0E-147
blast NP_505099 D1014.3 [Caenorhabditis elegans] gb|AAA96287.3| Hypothetical protein D1014.3 [Caenorhabditis elegans] 1.0E-142
blast NP_505099 D1014.3 [Caenorhabditis elegans] gb|AAA96287.3| Hypothetical protein D1014.3 [Caenorhabditis elegans] 1.0E-139
blast CAE66122 Hypothetical protein CBG11346 [Caenorhabditis briggsae] 1.0E-134
blast CAE66122 Hypothetical protein CBG11346 [Caenorhabditis briggsae] 1.0E-130
blast AAH82354 Napb-prov protein [Xenopus laevis] gb|AAH77875.1| Napb-prov protein [Xenopus laevis] 6.0E-84
blast AAH82354 Napb-prov protein [Xenopus laevis] gb|AAH77875.1| Napb-prov protein [Xenopus laevis] 8.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
D1014.3 1 37-59
Sequence
Target Sequence 
>C. ELEGANS:189830_AT
cagagcgtgctgttcaatgtcttgaaaaaacttcggaaatctacactgacatgggtcgct
tcacaatggccgcaaaaaatcatgtaagcattgctgaactctacgaaactgagcttccgg
acaaagagcaatgtgtgaagcactaccaacaagccgccgactattataaaggagaagaac
agaaaagtagtgccagcaagtgccttgtcaaagtagccatgtattctgccgaattggaaa
agtattctcaagctattgctgtattcgaagagattgcattcttcgaagccgatcattcaa
ccctcaagtatgctgctaaaggacacttcttccaagctcttttatgtcatttgtgcattg
atccaatcaacacacaacaagcacttcaaaagtacgaaaacgcgtctccatcgttcacag
attcgagggaatgtaaatttgtaaaggaactattggcagctattgatgaaaagaaagaag
aaacttttaccgaatgtgtggcaaactttgacaagattagcagactcgataactggtcga
cttctctgcttctcaaggtaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGCGTGCTGTTCAATGTCTTGA 257 205 1136 Antisense
CACTGACATGGGTCGCTTCACAATG 186 199 1179 Antisense
CTCTACGAAACTGAGCTTCCGGACA 440 227 1234 Antisense
GTGTGAAGCACTACCAACAAGCCGC 370 487 1268 Antisense
AAGTAGTGCCAGCAAGTGCCTTGTC 195 155 1320 Antisense
AAGTAGCCATGTATTCTGCCGAATT 597 157 1346 Antisense
GAGATTGCATTCTTCGAAGCCGATC 265 397 1405 Antisense
ATTCAACCCTCAAGTATGCTGCTAA 442 11 1430 Antisense
ACACTTCTTCCAAGCTCTTTTATGT 297 111 1458 Antisense
GTACGAAAACGCGTCTCCATCGTTC 667 453 1527 Antisense
GACTTCTCTGCTTCTCAAGGTAAAG 652 371 1674 Antisense
Sequence Source Affymetrix Proprietary Database