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[189829_at]

Description T28H11.1_rc /REP_DB=WormBase Gene ID /WP=CE27451 /GEN=ssq-4 /TR=Q23062 /GB=AAB04604.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 94      4grp_total > 61      6grp_cgc > 89      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.3
(-3)
A 		19.7
(1.9)
A 		23.8
(3)
A 		14.4
(0.4)
A 		22
B 33.3
(3)
A 		7.2
(-3)
A 		28.9
(2)
A 		24.2
(0.9)
A 		26
C 22.4
(1.8)
A 		27
(3)
A 		3.3
(-3)
A 		6.5
(-2.2)
A 		24
avr 19.3
(3) 		18
(1.2) 		18.7
(2.2) 		15
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 41.9
(3)
A 		7.7
(-2.5)
A 		31.4
(1.3)
A 		4.8
(-3)
A 		36.6
(2.1)
A 		22.2
(-0.2)
A 		37
B 0.9
(-3)
A 		6.3
(-1.7)
A 		4.4
(-2.2)
A 		5.5
(-1.9)
A 		13.7
(-0)
A 		26.7
(3)
A 		26
C 3.5
(-2.7)
A 		1.8
(-3)
A 		19
(0.2)
A 		34.2
(3)
A 		28.2
(1.9)
A 		12.1
(-1.1)
A 		32
avr 15.4
(-0.1) 		5.3
(-3) 		18.3
(0.7) 		14.8
(-0.3) 		26.2
(3) 		20.3
(1.3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		4.3
(0.9)
A 		6.2
(3)
A 		2.1
(-1.6)
A 		5
B 10.6
(3)
A 		1.8
(-3)
A 		6.7
(0.3)
A 		5.2
(-0.7)
A 		9
C 7.4
(2.6)
A 		7.8
(3)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		7
avr 6.3
(3) 		4.6
(0.1) 		4.7
(0.3) 		2.8
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.7
(0.9)
A 		2.7
(-2.1)
A 		6.8
(0.4)
A 		1.2
(-3)
A 		11.1
(3)
A 		5.4
(-0.5)
A 		10
B 0.3
(-3)
A 		2.1
(-1.9)
A 		1.1
(-2.5)
A 		1.5
(-2.3)
A 		5.6
(0.3)
A 		10
(3)
A 		10
C 1.3
(-2.4)
A 		0.5
(-3)
A 		4.8
(0)
A 		6.9
(1.5)
A 		9.1
(3)
A 		4
(-0.6)
A 		9
avr 3.1
(-1.9) 		1.8
(-3) 		4.2
(-0.9) 		3.2
(-1.8) 		8.6
(3) 		6.5
(1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28144
Sequence Type Exemplar sequence
Representative Public ID T28H11.1 NCBI
Target Description T28H11.1_rc /REP_DB=WormBase Gene ID /WP=CE27451 /GEN=ssq-4 /TR=Q23062 /GB=AAB04604.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T28H11.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T28H11.1 T28H11.1_rc /REP_DB=WormBase Gene ID /WP=CE27451 /GEN=ssq-4 /TR=Q23062 /GB=AAB04604.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5016504-5017720(-) 97.17 100.0
chrIV:7111621-7112832(-) 97.43 97.43
Public Domain and Genome References
Ensembl T28H11.1
Sequence
Target Sequence 
>C. ELEGANS:189829_AT
tgttccctctgaaattcaaactcacgtgtagcaaagtatcctgcatcatttgaagcagct
ggtggtgctccaccgccacctccacctccaactgggcctcctccgacaccaaagtaagcc
gattgagatccactggcagcgctccggctccagctcccaagtaacacgacactccaggtg
gtggtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCCCTCTGAAATTCAAACTCAC 90 563 870 Antisense
GAAATTCAAACTCACGTGTAGCAAA 322 361 880 Antisense
AACTCACGTGTAGCAAAGTATCCTG 297 141 888 Antisense
TGTAGCAAAGTATCCTGCATCATTT 165 561 896 Antisense
AAAGTATCCTGCATCATTTGAAGCA 150 123 902 Antisense
CCTGCATCATTTGAAGCAGCTGGTG 188 267 909 Antisense
CTCCTCCGACACCAAAGTAAGCCGA 184 233 967 Antisense
GTAAGCCGATTGAGATCCACTGGCA 177 463 983 Antisense
CCCAAGTAACACGACACTCCAGGTG 411 255 1025 Antisense
GTAACACGACACTCCAGGTGGTGGT 340 459 1030 Antisense
AACACGACACTCCAGGTGGTGGTGC 213 135 1032 Antisense
Sequence Source Affymetrix Proprietary Database