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[189827_at]

Description T28H11.5_rc /REP_DB=WormBase Gene ID /WP=CE14377 /GEN=ssq-2 /TR=Q23057 /GB=AAB04598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 98      4grp_total > 27      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 56
(1.4)
A 		70.2
(3)
A 		17.1
(-3)
A 		54.1
(1.2)
A 		53
B 16.8
(-3)
A 		84.6
(3)
A 		70.3
(1.7)
A 		78.5
(2.5)
A 		68
C 74.8
(3)
A 		24.9
(-3)
A 		48.7
(-0.1)
A 		60.2
(1.2)
A 		50
avr 49.2
(-1.8) 		59.9
(1.6) 		45.4
(-3) 		64.3
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 24.1
(-1.9)
A 		44.4
(0.9)
A 		59.7
(3)
A 		16.4
(-3)
A 		27.2
(-1.5)
A 		55.8
(2.5)
A 		43
B 17.9
(-2.7)
A 		17
(-2.9)
A 		16.4
(-3)
A 		17.2
(-2.8)
A 		23.7
(-1.4)
A 		44.6
(3)
A 		28
C 9.3
(-2.9)
A 		8
(-3)
A 		19
(-1.9)
A 		30.8
(-0.6)
A 		65.8
(3)
A 		22.4
(-1.5)
A 		58
avr 17.1
(-3) 		23.1
(-1.5) 		31.7
(0.7) 		21.5
(-1.9) 		38.9
(2.5) 		40.9
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.4
(3)
A 		15.2
(1)
A 		4.5
(-3)
A 		7.9
(-1.7)
A 		16
B 5.4
(-3)
A 		20.9
(3)
A 		16.3
(1.2)
A 		16.7
(1.4)
A 		16
C 24.8
(3)
A 		7.2
(-3)
A 		17
(0.3)
A 		10.1
(-2)
A 		18
avr 16.9
(3) 		14.4
(0.2) 		12.6
(-1.9) 		11.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.4
(-2.9)
A 		15.8
(3)
A 		13
(1.6)
A 		4.2
(-3)
A 		8.2
(-0.9)
A 		13.6
(1.9)
A 		12
B 6.2
(-2)
A 		5.7
(-2.2)
A 		4
(-3)
A 		4.6
(-2.7)
A 		9.6
(-0.3)
A 		16.6
(3)
A 		13
C 3.4
(-2.7)
A 		2.4
(-3)
A 		4.8
(-2.2)
A 		6.2
(-1.8)
A 		21.3
(3)
A 		7.5
(-1.4)
A 		19
avr 4.7
(-3) 		8
(-0.6) 		7.3
(-1.1) 		5
(-2.8) 		13
(3) 		12.6
(2.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28145
Sequence Type Exemplar sequence
Representative Public ID T28H11.5 NCBI
Target Description T28H11.5_rc /REP_DB=WormBase Gene ID /WP=CE14377 /GEN=ssq-2 /TR=Q23057 /GB=AAB04598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T28H11.5
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T28H11.5 T28H11.5_rc /REP_DB=WormBase Gene ID /WP=CE14377 /GEN=ssq-2 /TR=Q23057 /GB=AAB04598.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068297 11/11 Negative Strand Matching Probes A 
SNAP00000000746 11/11 Negative Strand Matching Probes None
GENEFINDER00000000759 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4996172-4997492(-) 100.0 100.0
Public Domain and Genome References
Ensembl T28H11.5
Sequence
Target Sequence 
>C. ELEGANS:189827_AT
ctccaacggccgtcatagtgctggctccagttggtgctccgccgacagcggtcattgtgc
tggctccagttggtgctcctccaaaggccgtcatagggctggctccagttggtgctcctc
cgacagcagtcatagtgctggctccagttggtgctccgccgacagcggtcattgtgctgg
ctccggatggtactcctccgacggcagtcatggtagatgctcctctcggggcacctccta
cagctgtcatagtagaagctcctgatggagctccaccaagagcagtcattgttgaggcac
cacctccgccagctggtggtggggctccaatagagacggcagctggtgctcccccgactg
gtgctcctccaacagcgaaataagcagactgggctccgccacctccacctccacctccgg
ctcccatgtagactgatgttcctggtggtggtgcagcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCAACGGCCGTCATAGTGCTGGC 4 237 654 Antisense
GCTCCTCCAAAGGCCGTCATAGGGC 302 299 728 Antisense
CATAGGGCTGGCTCCAGTTGGTGCT 709 199 745 Antisense
AGCAGTCATAGTGCTGGCTCCAGTT 69 79 778 Antisense
GATGGAGCTCCACCAAGAGCAGTCA 523 407 917 Antisense
CAGTCATTGTTGAGGCACCACCTCC 327 207 936 Antisense
GTGGTGGGGCTCCAATAGAGACGGC 502 487 969 Antisense
AATAGAGACGGCAGCTGGTGCTCCC 564 171 982 Antisense
GAAATAAGCAGACTGGGCTCCGCCA 305 363 1030 Antisense
CGGCTCCCATGTAGACTGATGTTCC 51 243 1071 Antisense
ATGTTCCTGGTGGTGGTGCAGCACC 257 47 1089 Antisense
Sequence Source Affymetrix Proprietary Database