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[189826_at]

Description F25D1.1 /REP_DB=WormBase Gene ID /WP=CE05722 /TR=Q19775 /GB=CAA98265.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 67      6grp_total > 60      4grp_total > 46      6grp_highest_sub > 03_04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1052
1 2 3 4 range
A 2488.6
(3)
P 		2000.2
(-0.6)
P 		1672.5
(-3)
P 		1810.4
(-2)
P 		816
B 2540.3
(3)
P 		1784.3
(-1.3)
P 		1513
(-2.9)
P 		1488.1
(-3)
P 		1052
C 2389.1
(3)
P 		2039
(0.4)
P 		1828.9
(-1.1)
P 		1576.7
(-3)
P 		812
avr 2472.7
(3) 		1941.2
(-0.8) 		1671.5
(-2.7) 		1625.1
(-3) 		848

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 1521.4
(-3)
P 		1763.7
(-0.3)
P 		1664
(-1.4)
P 		2063.4
(3)
P 		1553.4
(-2.6)
P 		1816.8
(0.3)
P 		542
B 1722.4
(-1.2)
P 		1575.3
(-2.5)
P 		1751.6
(-0.9)
P 		2192.7
(3)
P 		1531.1
(-2.9)
P 		1519.6
(-3)
P 		673
C 1724.7
(-1.2)
P 		1668.2
(-1.7)
P 		2220.5
(2.4)
P 		2295.4
(3)
P 		1486.4
(-3)
P 		1608.6
(-2.1)
P 		809
avr 1656.2
(-1.8) 		1669.1
(-1.7) 		1878.7
(0.2) 		2183.8
(3) 		1523.6
(-3) 		1648.3
(-1.9) 		660
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 641
1 2 3 4 range
A 906.1
(3)
P 		434.2
(-1.4)
P 		437.2
(-1.4)
P 		265
(-3)
P 		641
B 810.1
(3)
P 		440.7
(-1.5)
P 		350.6
(-2.6)
P 		317.1
(-3)
P 		493
C 790.9
(3)
P 		586.2
(0.7)
P 		637.4
(1.2)
P 		265.9
(-3)
P 		525
avr 835.7
(3) 		487
(-0.8) 		475.1
(-0.9) 		282.7
(-3) 		553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 359
1 2 3 4 5 6 range
A 280.5
(-3)
P 		627.2
(3)
P 		362.4
(-1.6)
P 		523.3
(1.2)
P 		468.8
(0.3)
P 		442.3
(-0.2)
P 		347
B 599.3
(2.3)
P 		524.4
(0)
P 		425.3
(-3)
P 		580.8
(1.7)
P 		622.1
(3)
P 		566.7
(1.3)
P 		197
C 639.3
(3)
P 		509
(-1.4)
P 		565.2
(0.5)
P 		461.6
(-3)
P 		481
(-2.3)
P 		538.5
(-0.4)
P 		178
avr 506.4
(0.2) 		553.5
(3) 		451
(-3) 		521.9
(1.2) 		524
(1.3) 		515.8
(0.8) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11292
Sequence Type Exemplar sequence
Representative Public ID F25D1.1 NCBI
Target Description F25D1.1 /REP_DB=WormBase Gene ID /WP=CE05722 /TR=Q19775 /GB=CAA98265.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028671(11), NM_001028672(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028671 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-93) (tag-93) mRNA, complete cds. 11/11 None
NM_001028672 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-93) (tag-93) mRNA, complete cds. 11/11 None
SNAP00000015978 ENSEMBL cdna:SNAP chromosome:CEL140:V:10535963:10538565:-1 11/11 None
GENEFINDER00000015983 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10535963:10538565:-1 11/11 None
F25D1.1a ENSEMBL cdna:known chromosome:CEL140:V:10535475:10538816:-1 gene:F25D1.1 11/11 None
F25D1.1b ENSEMBL cdna:known chromosome:CEL140:V:10535963:10537891:-1 gene:F25D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10535962-10538565(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25D1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98265 Hypothetical protein F25D1.1a [Caenorhabditis elegans] ref|NP_001023842.1| Temporarily Assigned Gene name family member (tag-93) [Caenorhabditis elegans] 0.0
blast CAE64837 Hypothetical protein CBG09633 [Caenorhabditis briggsae] 0.0
blast CAE54908 Hypothetical protein F25D1.1b [Caenorhabditis elegans] ref|NP_001023843.1| Temporarily Assigned Gene name family member (tag-93) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 2.4E-105
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 3.5E-104
Sequence
Target Sequence 
>C. ELEGANS:189826_AT
ggtgctggtggttctgttatgattcaaagaataaatggaagtctggccgtaagcagagca
ttcggagactacgagtataaagatgatccgcgactacctgctgatcaacaacttgtctct
cctgaaccagatgtttacatccgagagagaaatcttgaaaatgatcagtttatggttgtt
gcatgtgacggaatctacgatgtgatgacgaatgaagaactcgcagagtttgtgaaagat
cgcctttcagttcactctgatttgagagaggtgtgcgacgatgttctcgacgaatgcctt
gtgaaaggaagtcgggataatatgacgatggtggttgtatgtttccctgctgcaccagaa
gtcaatattcatcgaaaagaagccgaggaagcatgggtgtcccgagtgaagactgttata
aatcaattcctcgatgaggctgttgctgcggaagacttcaaacaagaagaagacatggtc
actctcaagagcattctggataaagtaacagcaaatggactgttgccaactgatttgcgt
gttcctgaacatacagttactacgctggcccagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCTGGTGGTTCTGTTATGATTC 600 501 811 Antisense
TAAAGATGATCCGCGACTACCTGCT 378 641 888 Antisense
GATCAACAACTTGTCTCTCCTGAAC 446 421 913 Antisense
ATCGCCTTTCAGTTCACTCTGATTT 46 39 1049 Antisense
AGGTGTGCGACGATGTTCTCGACGA 40 59 1079 Antisense
GATGGTGGTTGTATGTTTCCCTGCT 662 401 1137 Antisense
TTTCCCTGCTGCACCAGAAGTCAAT 152 671 1152 Antisense
GCCGAGGAAGCATGGGTGTCCCGAG 321 285 1192 Antisense
GAGGCTGTTGCTGCGGAAGACTTCA 56 407 1246 Antisense
TGCCAACTGATTTGCGTGTTCCTGA 28 587 1334 Antisense
TACAGTTACTACGCTGGCCCAGAAA 100 645 1362 Antisense
Sequence Source Affymetrix Proprietary Database