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[189822_s_at] synaptobrevin like

Description F23H12.1 /REP_DB=WormBase Gene ID /WP=CE27756 /TR=Q19767 /GB=CAA98946.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=synaptobrevin like
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 82      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 72      6grp_total > 81      4grp_total > 24      6grp_highest_sub > 04      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 344
1 2 3 4 range
A 310.1
(-3)
P 		380.1
(-0.7)
P 		430.1
(1)
P 		489.9
(3)
P 		180
B 276.9
(-3)
P 		392.9
(-1)
P 		524
(1.3)
P 		621.1
(3)
P 		344
C 317.7
(-3)
P 		439.1
(2.4)
P 		428.7
(1.9)
P 		452.3
(3)
P 		135
avr 301.6
(-3) 		404
(-0.2) 		460.9
(1.4) 		521.1
(3) 		220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 510
1 2 3 4 5 6 range
A 241.6
(-3)
P 		417
(0.3)
P 		350.4
(-0.9)
P 		557.8
(3)
P 		546.5
(2.8)
P 		364.3
(-0.7)
P 		316
B 237.1
(-3)
P 		447
(0.3)
P 		374.2
(-0.8)
P 		618.4
(3)
P 		499.5
(1.1)
P 		414.6
(-0.2)
P 		381
C 329.9
(-3)
P 		525.5
(-0.2)
P 		412.6
(-1.8)
P 		747.4
(3)
P 		448.3
(-1.3)
P 		506.7
(-0.5)
P 		418
avr 269.5
(-3) 		463.2
(0.1) 		379.1
(-1.2) 		641.2
(3) 		498.1
(0.7) 		428.5
(-0.4) 		372
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 112.9
(3)
P 		82.5
(-1.4)
P 		112.4
(2.9)
P 		71.7
(-3)
P 		41
B 88.3
(-3)
P 		97
(-1.8)
P 		121.4
(1.5)
P 		132.3
(3)
P 		44
C 105.2
(-0.6)
P 		126.2
(1.1)
P 		149.4
(3)
P 		76.3
(-3)
P 		73
avr 102.1
(-1.5) 		101.9
(-1.5) 		127.7
(3) 		93.4
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 44.5
(-3)
P 		148.3
(2.2)
P 		76.3
(-1.4)
P 		141.5
(1.8)
P 		164.9
(3)
P 		88.7
(-0.8)
P 		120
B 82.5
(-3)
P 		148.8
(0.3)
P 		90.9
(-2.6)
P 		163.8
(1)
P 		203
(3)
P 		154.6
(0.6)
P 		121
C 122.3
(-1.4)
P 		160.3
(2.1)
P 		105
(-3)
P 		150.3
(1.2)
P 		145.1
(0.7)
P 		169.6
(3)
P 		65
avr 83.1
(-3) 		152.5
(1.7) 		90.7
(-2.5) 		151.9
(1.7) 		171
(3) 		137.6
(0.7) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189822_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13741
Sequence Type Exemplar sequence
Representative Public ID F23H12.1 NCBI
Target Description F23H12.1 /REP_DB=WormBase Gene ID /WP=CE27756 /TR=Q19767 /GB=CAA98946.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=synaptobrevin like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073692(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073692 NCBI Caenorhabditis elegans SyNaptoBrevin related family member (snb-2) (snb-2) mRNA, complete cds. 11/11 None
SNAP00000020007 ENSEMBL cdna:SNAP chromosome:CEL140:V:12347050:12348495:-1 11/11 None
GENEFINDER00000020020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12347050:12348495:-1 11/11 None
F23H12.1 ENSEMBL cdna:known chromosome:CEL140:V:12346810:12348507:-1 gene:F23H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12347396-12348656(-) 100.0 100.0
Public Domain and Genome References
Gene Title synaptobrevin like
Gene Symbol snb-2
Ensembl F23H12.1
Entrez Gene 179692 Entrez gene
SwissProt Q19767 EMBL-EBI
WormBase CE27756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98946 Hypothetical protein F23H12.1 [Caenorhabditis elegans] ref|NP_506093.1| SyNaptoBrevin related family member (snb-2) [Caenorhabditis elegans] gb|AAF45301.1| synaptobrevin-like protein [Caenorhabditis elegans] 4.0E-62
blast CAA98946 Hypothetical protein F23H12.1 [Caenorhabditis elegans] ref|NP_506093.1| SyNaptoBrevin related family member (snb-2) [Caenorhabditis elegans] gb|AAF45301.1| synaptobrevin-like protein [Caenorhabditis elegans] 8.0E-60
blast CAE75461 Hypothetical protein CBG23459 [Caenorhabditis briggsae] 3.0E-37
blast XP_692479 PREDICTED: similar to Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin 1) [Danio rerio] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001388 EMBL-EBI Synaptobrevin 3.2E-37
Pfam IPR001388 EMBL-EBI Synaptobrevin 3.2E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506093.1 1 95-117
F23H12.1 1 95-117
SNAP00000020007 1 91-113
GENEFINDER00000020020 1 91-113
Sequence
Target Sequence 
>C. ELEGANS:189822_S_AT
gaaatggtgaagctcaaccgccaacaggtacttataacactaaacgcatgcaaatggctc
aagctcaagtcaacgaagtcattgatgtgatgagaaacaatgtgaacaaggttatggaac
gtgatgttcagctgaactctttggatcatcgcgccgaagttcttcagaacggagcatctc
aattccaacagtcttcccgtactcttcgtcagaaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGGTGAAGCTCAACCGCCAAC 550 361 164 Antisense
AGCTCAACCGCCAACAGGTACTTAT 257 79 174 Antisense
GGTACTTATAACACTAAACGCATGC 340 503 190 Antisense
AACGCATGCAAATGGCTCAAGCTCA 263 143 206 Antisense
TCAAGCTCAAGTCAACGAAGTCATT 266 627 222 Antisense
TGGAACGTGATGTTCAGCTGAACTC 565 547 278 Antisense
AGCTGAACTCTTTGGATCATCGCGC 19 81 293 Antisense
ATCATCGCGCCGAAGTTCTTCAGAA 109 31 308 Antisense
AGTTCTTCAGAACGGAGCATCTCAA 534 63 321 Antisense
GAGCATCTCAATTCCAACAGTCTTC 570 389 335 Antisense
TTCCCGTACTCTTCGTCAGAAATAC 52 697 357 Antisense
Sequence Source Affymetrix Proprietary Database