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[189819_s_at] glucose transporter

Description ZK829.9 /REP_DB=WormBase Gene ID /WP=CE06657 /TR=Q23626 /GB=CAA98077.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glucose transporter
Cluster 6grp_total > 88      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 36.1
(-1.8)
A 		23
(-3)
A 		55
(-0)
A 		87.1
(3)
A 		64
B 23.7
(-3)
A 		62.9
(3)
A 		39.7
(-0.6)
A 		57.1
(2.1)
P 		39
C 16.2
(-3)
A 		76.1
(3)
A 		47
(0.1)
A 		34.7
(-1.1)
A 		60
avr 25.3
(-3) 		54
(2) 		47.2
(0.8) 		59.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 93.3
(-2.5)
P 		64.3
(-2.9)
A 		57.7
(-3)
A 		60
(-3)
A 		291.3
(0.2)
P 		492
(3)
P 		434
B 113.7
(-1.9)
P 		42.6
(-2.7)
P 		10.7
(-3)
A 		66
(-2.4)
A 		205.4
(-0.9)
P 		571.4
(3)
P 		561
C 87.2
(-2.4)
P 		51.5
(-3)
P 		68
(-2.7)
A 		100.6
(-2.2)
M 		257.6
(0.2)
P 		433
(3)
P 		382
avr 98.1
(-2.3) 		52.8
(-2.9) 		45.5
(-3) 		75.5
(-2.6) 		251.4
(-0.3) 		498.8
(3) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.2
(2.2)
A 		5
(-3)
A 		14.4
(3)
A 		12.7
(1.9)
A 		9
B 7.5
(-3)
A 		15.5
(3)
A 		9.2
(-1.7)
A 		12.2
(0.5)
P 		8
C 5.3
(-3)
A 		21.9
(3)
A 		16.4
(1)
A 		5.9
(-2.8)
A 		17
avr 8.7
(-3) 		14.1
(3) 		13.3
(2.1) 		10.3
(-1.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 17.2
(-2.7)
P 		22.9
(-2.4)
A 		12.6
(-3)
A 		15.2
(-2.9)
A 		87.9
(1.2)
P 		119.8
(3)
P 		107
B 39.6
(-1.9)
P 		14.2
(-2.7)
P 		2.6
(-3)
A 		17.5
(-2.6)
A 		83.4
(-0.7)
P 		213.1
(3)
P 		211
C 32.3
(-2.2)
P 		15.7
(-3)
P 		17.3
(-2.9)
A 		20.2
(-2.8)
M 		83.4
(0.1)
P 		144.9
(3)
P 		129
avr 29.7
(-2.2) 		17.6
(-2.7) 		10.8
(-3) 		17.6
(-2.7) 		84.9
(-0) 		159.3
(3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8613
Sequence Type Exemplar sequence
Representative Public ID ZK829.9 NCBI
Target Description ZK829.9 /REP_DB=WormBase Gene ID /WP=CE06657 /TR=Q23626 /GB=CAA98077.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=glucose transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069871(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069871 NCBI Caenorhabditis elegans ZK829.9 (ZK829.9) mRNA, complete cds. 11/11 None
SNAP00000012770 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11970707:11972397:1 11/11 None
GENEFINDER00000012772 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11970707:11972397:1 11/11 None
ZK829.9 ENSEMBL cdna:known chromosome:CEL140:IV:11970504:11972622:1 gene:ZK829.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11970712-11972403(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose transporter
Ensembl ZK829.9
Entrez Gene 178134 Entrez gene
SwissProt Q23626 EMBL-EBI
WormBase CE06657 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98077 Hypothetical protein ZK829.9 [Caenorhabditis elegans] ref|NP_502272.1| ZK829.9 [Caenorhabditis elegans] 0.0
blast CAE62157 Hypothetical protein CBG06204 [Caenorhabditis briggsae] 0.0
blast CAE59000 Hypothetical protein CBG02274 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.6E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502272.1 11 10-32,97-115,125-147,160-177,187-209,285-307,317-339,346-365,375-397,410-432,437-459
ZK829.9 11 10-32,97-115,125-147,160-177,187-209,285-307,317-339,346-365,375-397,410-432,437-459
SNAP00000012770 11 10-32,97-115,125-147,160-177,187-209,285-307,317-339,346-365,375-397,410-432,437-459
GENEFINDER00000012772 11 10-32,97-115,125-147,160-177,187-209,285-307,317-339,346-365,375-397,410-432,437-459
Sequence
Target Sequence 
>C. ELEGANS:189819_S_AT
cagtatccgctgcgattctgactcttccattctatccgatccttcagaacagtacattct
ttttcacagatatgggagttgatatgaaaacatcacaattggcttcaagctttatgatgg
ttgttctaacaatctcttccatttgctcaactcttattattgacaaattgcctcgcagaa
ttcttctactcacttgcggttcttgcacagttctcttcctgacaattttcgcggtatctg
agcaaatgcaccagaagtcgatcgctatgggagcttgttttggattcatcatgtcatatg
gaatcggagttgggcctgtcatctggtcaattccaccggagctctcaccattggccgacc
gatcaatgatgttctgcttggtctactcgattcacagctgcctcgttgtcgtcaccaact
ttgcgacgattccacttttcatgagcatcggcgcattctcattcgtattgctttttgcca
ttccgtccgcattcgcacttgtctatctactggtgtgtcttccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTATCCGCTGCGATTCTGACTCT 418 207 869 Antisense
TAACAATCTCTTCCATTTGCTCAAC 589 639 995 Antisense
TTGCCTCGCAGAATTCTTCTACTCA 126 703 1036 Antisense
TCACTTGCGGTTCTTGCACAGTTCT 607 627 1058 Antisense
CTTCCTGACAATTTTCGCGGTATCT 41 219 1083 Antisense
AATGCACCAGAAGTCGATCGCTATG 566 165 1113 Antisense
CTGCTTGGTCTACTCGATTCACAGC 548 237 1242 Antisense
ACCAACTTTGCGACGATTCCACTTT 203 85 1282 Antisense
TCCACTTTTCATGAGCATCGGCGCA 610 587 1299 Antisense
TTCGTATTGCTTTTTGCCATTCCGT 130 697 1330 Antisense
CTATCTACTGGTGTGTCTTCCGGAG 692 223 1371 Antisense
Sequence Source Affymetrix Proprietary Database