[Home] | [Total List]

[189816_s_at]

Description F20C5.2 /REP_DB=WormBase Gene ID /WP=CE27986 /GEN=klp-11 /TR=Q19633 /GB=CAA92295.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=kinesin
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 70      6grp_total > 34      4grp_total > 46      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 484
1 2 3 4 range
A 718.4
(3)
P 		524
(0)
P 		324.8
(-3)
P 		360.5
(-2.5)
P 		394
B 602
(3)
P 		467.2
(0.5)
P 		272.8
(-3)
P 		295.1
(-2.6)
P 		329
C 755.4
(3)
P 		377.7
(-1.7)
P 		284.1
(-2.8)
P 		271.1
(-3)
P 		484
avr 691.9
(3) 		456.3
(-0.6) 		293.9
(-3) 		308.9
(-2.8) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 515.9
(3)
P 		386.4
(0.3)
P 		406.9
(0.8)
P 		247.2
(-2.5)
P 		223.1
(-3)
P 		260.5
(-2.2)
P 		293
B 438.5
(3)
P 		292.3
(0.1)
P 		344.1
(1.1)
P 		281.4
(-0.2)
P 		140.9
(-3)
P 		241.1
(-1)
P 		298
C 398.5
(3)
P 		351.7
(1.9)
P 		397.1
(3)
P 		322.5
(1.1)
P 		152.5
(-3)
P 		243.6
(-0.8)
P 		246
avr 451
(3) 		343.5
(0.7) 		382.7
(1.5) 		283.7
(-0.6) 		172.2
(-3) 		248.4
(-1.4) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 261.6
(3)
P 		113.7
(-1.3)
P 		84.9
(-2.1)
P 		52.8
(-3)
P 		209
B 192
(3)
P 		115.4
(-0.6)
P 		63.2
(-3)
P 		62.9
(-3)
P 		129
C 250.1
(3)
P 		108.6
(-1.2)
P 		99
(-1.4)
P 		45.7
(-3)
P 		204
avr 234.6
(3) 		112.6
(-1) 		82.4
(-2.1) 		53.8
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 95.1
(-0.4)
P 		137.4
(3)
P 		88.6
(-0.9)
P 		62.7
(-3)
P 		67.3
(-2.6)
P 		63.4
(-2.9)
P 		75
B 152.6
(3)
P 		97.3
(-0.5)
P 		83.5
(-1.4)
P 		74.5
(-1.9)
P 		57.3
(-3)
P 		89.9
(-0.9)
P 		95
C 147.7
(3)
P 		107.3
(0.5)
P 		101.1
(0.2)
P 		64.9
(-2.1)
P 		49.4
(-3)
P 		81.6
(-1)
P 		98
avr 131.8
(3) 		114
(1.6) 		91.1
(-0.3) 		67.4
(-2.2) 		58
(-3) 		78.3
(-1.3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189816_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9546
Sequence Type Exemplar sequence
Representative Public ID F20C5.2 NCBI
Target Description F20C5.2 /REP_DB=WormBase Gene ID /WP=CE27986 /GEN=klp-11 /TR=Q19633 /GB=CAA92295.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=kinesin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027968 NCBI Caenorhabditis elegans F20C5.2b (kinesin) mRNA, complete cds. 11/11 None
SNAP00000022216 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8755262:8761978:-1 11/11 None
GENEFINDER00000022226 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8755262:8761978:-1 11/11 None
F20C5.2b ENSEMBL cdna:known chromosome:CEL140:IV:8755046:8761978:-1 gene:F20C5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
AB017106 11/11 Negative Strand Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177685 2 1 NM_001027968 172023_x_at (11), 173453_s_at (11), 189816_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8755267-8761984(-) 99.15 100.0
Public Domain and Genome References
Ensembl F20C5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD36488 Hypothetical protein F20C5.2b [Caenorhabditis elegans] ref|NP_001023139.1| F20C5.2b [Caenorhabditis elegans] 0.0
blast CAA92295 Hypothetical protein F20C5.2a [Caenorhabditis elegans] ref|NP_741473.1| F20C5.2a [Caenorhabditis elegans] 0.0
blast AAF99085 KRP95 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.3E-6
Pfam IPR001752 EMBL-EBI Kinesin, motor region 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023139.1 1 1107-1129
F20C5.2b 1 1107-1129
SNAP00000022216 1 1089-1111
GENEFINDER00000022226 1 1101-1123
Sequence
Target Sequence 
>C. ELEGANS:189816_S_AT
gatccaagatgtcttcttgctcttcactcatctccattccgtctgtcaacatctgcatca
gccacttcttcatctcaacaccaaagattgttgacgtcatcatcaatccacgttgcatcc
tcatactctcgacttctgcctcgacgccctcaatgggttcgtagtcaaccatcaagttca
gtccaacttgctgaatcgacagtatcattggattcttttgaattgatgaatactaaatcc
aatttctatttggattccgatgagtcttcttctgatgattccgatgctgaatttggtgct
gagtgttctgttgatggtgttgttgaaacaccgagaacacgtcgaaagttgatttcagtt
agaaggttgaaagacagaaatcgaaagaaattcaaatgttccatgaaacgtctacatcca
ccaacttcaccatcaaaaatctcaaaaagtgcttcaagttcatccgatcttacctcattc
ttctgtatctcttcaccatatttctacctcctcatcgcattcctattccgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAAGATGTCTTCTTGCTCTTC 584 415 2833 Antisense
GTCTGTCAACATCTGCATCAGCCAC 593 471 2873 Antisense
CGTCATCATCAATCCACGTTGCATC 530 245 2927 Antisense
CGACGCCCTCAATGGGTTCGTAGTC 483 243 2974 Antisense
AGTCAACCATCAAGTTCAGTCCAAC 258 61 2995 Antisense
GGATTCCGATGAGTCTTCTTCTGAT 386 509 3084 Antisense
GGTGCTGAGTGTTCTGTTGATGGTG 327 501 3127 Antisense
GTTCCATGAAACGTCTACATCCACC 441 441 3230 Antisense
GCTTCAAGTTCATCCGATCTTACCT 3 305 3283 Antisense
TGTATCTCTTCACCATATTTCTACC 235 561 3316 Antisense
CTCATCGCATTCCTATTCCGATTTC 560 229 3343 Antisense
Sequence Source Affymetrix Proprietary Database