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[189815_at] cytochrome P450

Description T10B9.10 /REP_DB=WormBase Gene ID /WP=CE01655 /TR=SW:Q27519 /GB=CAA88609.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_total > 46      4grp_total > 03      6grp_cgc > 26      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 32.1
(-2.2)
A 		14.7
(-2.9)
A 		12
(-3)
A 		166.9
(3)
M 		155
B 13.8
(-2.5)
A 		5.9
(-3)
A 		11.3
(-2.7)
A 		101.1
(3)
A 		95
C 49.3
(-1)
A 		17.3
(-2.4)
A 		4.9
(-3)
A 		137.6
(3)
P 		133
avr 31.7
(-1.9) 		12.6
(-2.8) 		9.4
(-3) 		135.2
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 25.8
(3)
A 		8.8
(-2.4)
A 		15.4
(-0.3)
A 		7
(-3)
A 		7.7
(-2.8)
A 		9.6
(-2.2)
A 		19
B 40.9
(3)
A 		29.8
(0.4)
A 		33.3
(1.2)
A 		15.7
(-3)
A 		26.3
(-0.5)
A 		39.4
(2.6)
A 		25
C 10.9
(-2.8)
A 		89.9
(3)
A 		19
(-2.2)
A 		28.5
(-1.5)
A 		8.2
(-3)
A 		66.4
(1.3)
A 		82
avr 25.9
(-0.5) 		42.8
(3) 		22.6
(-1.2) 		17.1
(-2.4) 		14.1
(-3) 		38.5
(2.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 11.7
(-0.6)
A 		3.2
(-3)
A 		3.1
(-3)
A 		24.4
(3)
M 		21
B 4.4
(-2.1)
A 		1.4
(-3)
A 		2.6
(-2.6)
A 		21.5
(3)
A 		20
C 16.3
(1.1)
A 		5
(-2.1)
A 		1.7
(-3)
A 		23.2
(3)
P 		22
avr 10.8
(-0.6) 		3.2
(-2.8) 		2.5
(-3) 		23
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.8
(3)
A 		3.1
(-0.4)
A 		3.4
(0.2)
A 		1.8
(-3)
A 		2.3
(-2)
A 		2.3
(-2)
A 		3
B 14.2
(2.7)
A 		9.9
(0.3)
A 		8.1
(-0.7)
A 		4.1
(-3)
A 		10.7
(0.7)
A 		14.7
(3)
A 		11
C 4
(-2.7)
A 		27.4
(3)
A 		4.8
(-2.5)
A 		5.7
(-2.3)
A 		2.6
(-3)
A 		22.2
(1.7)
A 		25
avr 7.7
(-0.6) 		13.5
(3) 		5.4
(-2.1) 		3.9
(-3) 		5.2
(-2.2) 		13.1
(2.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2956
Sequence Type Exemplar sequence
Representative Public ID T10B9.10 NCBI
Target Description T10B9.10 /REP_DB=WormBase Gene ID /WP=CE01655 /TR=SW:Q27519 /GB=CAA88609.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063713 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13A7) (cyp-13A7) mRNA, complete cds. 11/11 None
SNAP00000024370 ENSEMBL cdna:SNAP chromosome:CEL140:II:9803531:9805351:1 11/11 None
GENEFINDER00000024377 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9803531:9805358:1 11/11 None
T10B9.10 ENSEMBL cdna:known chromosome:CEL140:II:9803531:9805358:1 gene:T10B9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9803527-9805355(+) 100.0 100.0
Public Domain and Genome References
Gene Title cytochrome P450
Gene Symbol cyp-13A7
Ensembl T10B9.10
Entrez Gene 188362 Entrez gene
SwissProt Q27519 EMBL-EBI
WormBase CE01655 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19484_S_AT thromboxane-A synthase, putative / cytochrome P450 family protein at
ATH1-121501:267380_AT thromboxane-A synthase, putative / cytochrome P450 family protein at
CANINE:1602619_AT hypothetical LOC479740 cfa
CANINE:1599869_X_AT hypothetical LOC479740 cfa
CANINE:1595263_X_AT hypothetical LOC479740 cfa
CANINE_2:CFA.10767.1.S1_S_AT hypothetical LOC479740 cfa
DROSOPHILA_2:1624159_AT dm
DROSGENOME1:147119_AT dm
CHICKEN:GGA.1163.1.S1_AT cytochrome P450 A 37 gga
CHICKEN:GGAAFFX.21825.1.S1_S_AT cytochrome P450 A 37 gga
HG-U95AV2:1757_I_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HC-G110:1757_I_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U95AV2:1759_F_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HC-G110:1759_F_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U95AV2:1758_R_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HC-G110:1758_R_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U95B:42514_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133_PLUS_2:211843_X_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133A:211843_X_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133A_2:211843_X_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133_PLUS_2:205939_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133A:205939_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-FOCUS:205939_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133A_2:205939_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HU35KSUBC:RC_N49309_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HUGENEFL:D00408_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HUGENEFL:D00408_S_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:G13386504_3P_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:G12082808_3P_X_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:G12082808_3P_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:G12082808_3P_A_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:HS.308638.0.A1_3P_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:211843_3P_X_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133_PLUS_2:243609_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133B:243609_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U95AV2:32705_AT cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HG-U133_PLUS_2:208367_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A:208367_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A_2:208367_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U95AV2:1755_I_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HC-G110:1755_I_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U95AV2:1756_F_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HC-G110:1756_F_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U95AV2:270_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HC-G110:270_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133_PLUS_2:205999_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A:205999_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-FOCUS:205999_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A_2:205999_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133_PLUS_2:210726_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A:210726_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-FOCUS:210726_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A_2:210726_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HUGENEFL:J04449_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HUGENEFL:D00003_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HUGENEFL:D00003_S_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HUGENEFL:D00408_S_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A:205998_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133_PLUS_2:205998_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133A_2:205998_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
U133_X3P:G6470134_3P_S_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
U133_X3P:G510085_3P_X_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
U133_X3P:G510085_3P_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
U133_X3P:G4503228_3P_S_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
U133_X3P:G13435385_3P_AT cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133_PLUS_2:231704_AT Cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U133B:231704_AT Cytochrome P450, family 3, subfamily A, polypeptide 4 hs
HG-U95B:42437_AT Cytochrome P450, family 3, subfamily A, polypeptide 7 hs
HU35KSUBB:RC_H93318_S_AT Cytochrome P450, family 3, subfamily A, polypeptide 7 hs
U133_X3P:HS.178738.1.A1_3P_AT Cytochrome P450, family 3, subfamily A, polypeptide 4 hs
MOUSE430_2:1419523_AT cytochrome P450, family 3, subfamily a, polypeptide 13 mm
MOE430A:1419523_AT cytochrome P450, family 3, subfamily a, polypeptide 13 mm
MOUSE430A_2:1419523_AT cytochrome P450, family 3, subfamily a, polypeptide 13 mm
MU11KSUBB:X63023_S_AT cytochrome P450, family 3, subfamily a, polypeptide 13 mm
MG-U74AV2:99463_AT cytochrome P450, family 3, subfamily a, polypeptide 13 mm
MU19KSUBC:TC41936_S_AT Cytochrome P450, family 3, subfamily a, polypeptide 13 (Cyp3a13), mRNA mm
RT-U34:U46118_AT cytochrome P450, family 3, subfamily a, polypeptide 13 rn
RG-U34A:U46118_AT cytochrome P450, family 3, subfamily a, polypeptide 13 rn
RAE230A:1370387_AT cytochrome P450, family 3, subfamily a, polypeptide 13 rn
RAT230_2:1370387_AT cytochrome P450, family 3, subfamily a, polypeptide 13 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88609 Hypothetical protein T10B9.10 [Caenorhabditis elegans] ref|NP_496114.1| CYtochrome P450 family member (cyp-13A7) [Caenorhabditis elegans] sp|Q27519|C13A7_CAEEL Putative cytochrome P450 CYP13A7 0.0
blast CAA88604 Hypothetical protein T10B9.2 [Caenorhabditis elegans] ref|NP_496112.1| CYtochrome P450 family member (cyp-13A5) [Caenorhabditis elegans] sp|Q27514|C13A5_CAEEL Putative cytochrome P450 CYP13A5 0.0
blast CAA88603 Hypothetical protein T10B9.1 [Caenorhabditis elegans] ref|NP_496111.1| CYtochrome P450 family member (cyp-13A4) [Caenorhabditis elegans] sp|Q27513|C13A4_CAEEL Putative cytochrome P450 CYP13A4 0.0
Protein Families
Method ID Description E-Value
p450 CP13_ONCMY Animalia; CYP1A3; tro; CP13_ONCMY; Trout; Q92109 1.0E-128
p450 CP12_RAT Animalia; CYP1A2; rat; CP12_RAT; Rattus sp.; P04799 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496114.1 2 5-27,215-234
T10B9.10 2 5-27,215-234
SNAP00000024370 2 5-27,215-234
GENEFINDER00000024377 2 5-27,215-234
Sequence
Target Sequence 
>C. ELEGANS:189815_AT
ttagctggatacgacacgactgccctttctctgtcatattcttcatatctcctggcaaca
catccagagattcagaagaaattacaagaagaagtggatagagaatgtccagaccctgaa
gtcacttttgatcagctgtcgaaattgaaatatttggaatgtgttgtgaaagaagcattg
agattgtatccattggcgtctcttgttcacaatcgaaaatgtctcaaaaccacaaatgtt
ctgggaatggaaatagaagctggaacaaatattaatgtggatacctggtctcttcaccat
gatccgaaagtttggggagatgatgttaacgagttcaagccggaaagatgggagtccggg
gatgaactattctttgctaaaggcggatatcttccgttcggcatgggaccaagaatttgt
attggtatgcgattggctatgatggaaatgaaaatgcttttgaccaatattttgaaaaac
tatacatttgaaaccacaccagaaactgtgattccattgaagttagtcggaactgctact
attgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGCTGGATACGACACGACTGCCC 131 681 985 Antisense
GATTGTATCCATTGGCGTCTCTTGT 477 435 1166 Antisense
TTGGCGTCTCTTGTTCACAATCGAA 638 705 1177 Antisense
AATGTGGATACCTGGTCTCTTCACC 590 163 1258 Antisense
GTCTCTTCACCATGATCCGAAAGTT 524 469 1272 Antisense
GTCCGGGGATGAACTATTCTTTGCT 682 473 1338 Antisense
AAGGCGGATATCTTCCGTTCGGCAT 704 159 1364 Antisense
ATCTTCCGTTCGGCATGGGACCAAG 622 11 1373 Antisense
ACTATACATTTGAAACCACACCAGA 548 99 1463 Antisense
ACACCAGAAACTGTGATTCCATTGA 291 109 1480 Antisense
AGTTAGTCGGAACTGCTACTATTGC 563 63 1505 Antisense
Sequence Source Affymetrix Proprietary Database