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[189813_at] Coiled-coil protein

Description R07E5.6 /REP_DB=WormBase Gene ID /WP=CE18124 /TR=Q21823 /GB=CAA83629.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled-coil protein
Cluster 6grp_total > 78      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.8
(-3)
A 		9.8
(-2.3)
A 		4.3
(-2.9)
A 		53
(3)
A 		49
B 20.9
(3)
A 		3
(-2.7)
A 		3.7
(-2.5)
A 		2.1
(-3)
A 		19
C 4.9
(-2.1)
A 		12.5
(0.9)
A 		2.5
(-3)
A 		17.8
(3)
A 		15
avr 9.9
(-1.2) 		8.4
(-1.6) 		3.5
(-3) 		24.3
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 6.6
(-2.7)
A 		2.8
(-3)
A 		5.4
(-2.8)
A 		5.4
(-2.8)
A 		25.9
(-1.1)
A 		76.9
(3)
P 		74
B 3.1
(-2.9)
A 		3.8
(-2.8)
A 		2.6
(-3)
A 		4.4
(-2.7)
A 		26.2
(1.4)
A 		34.7
(3)
P 		32
C 3.4
(-2.8)
A 		2
(-3)
A 		2.9
(-2.9)
A 		4.7
(-2.6)
A 		4.2
(-2.7)
A 		43.2
(3)
P 		41
avr 4.4
(-2.8) 		2.9
(-3) 		3.6
(-2.9) 		4.8
(-2.8) 		18.8
(-1) 		51.6
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-2.7)
A 		2.1
(-2.1)
A 		1.1
(-3)
A 		7.8
(3)
A 		7
B 6.7
(3)
A 		0.7
(-2.8)
A 		0.9
(-2.6)
A 		0.5
(-3)
A 		6
C 1.6
(-1.4)
A 		3.6
(3)
A 		0.9
(-3)
A 		3
(1.7)
A 		3
avr 3.2
(1.7) 		2.1
(-0.6) 		1
(-3) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		1
(-3)
A 		1.2
(-2.9)
A 		1.4
(-2.9)
A 		7.8
(-0.7)
A 		18.7
(3)
P 		18
B 1.1
(-2.8)
A 		1.3
(-2.7)
A 		0.6
(-3)
A 		1.2
(-2.7)
A 		10.6
(1.8)
A 		13
(3)
P 		12
C 1.2
(-2.7)
A 		0.6
(-3)
A 		0.7
(-3)
A 		1
(-2.8)
A 		1.4
(-2.7)
A 		14.5
(3)
P 		14
avr 1.2
(-2.8) 		1
(-2.9) 		0.8
(-3) 		1.2
(-2.8) 		6.6
(-0.6) 		15.4
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6791
Sequence Type Exemplar sequence
Representative Public ID R07E5.6 NCBI
Target Description R07E5.6 /REP_DB=WormBase Gene ID /WP=CE18124 /TR=Q21823 /GB=CAA83629.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Coiled-coil protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065487 NCBI Caenorhabditis elegans R07E5.6 (R07E5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000012860 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4398823:4402409:1 11/11 None
SNAP00000012847 ENSEMBL cdna:SNAP chromosome:CEL140:III:4398850:4402409:1 11/11 None
R07E5.6 ENSEMBL cdna:known chromosome:CEL140:III:4398782:4400867:1 gene:R07E5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4398822-4400867(+) 90.84 100.0
Public Domain and Genome References
Gene Title Coiled-coil protein
Ensembl R07E5.6
Entrez Gene 175569 Entrez gene
SwissProt Q21823 EMBL-EBI
WormBase CE18124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45044 Hypothetical protein F17C8.7 [Caenorhabditis elegans] ref|NP_001022543.1| F17C8.7 [Caenorhabditis elegans] 1.0E-139
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-132
blast CAA83629 Hypothetical protein R07E5.6 [Caenorhabditis elegans] ref|NP_497888.1| R07E5.6 [Caenorhabditis elegans] 1.0E-129
blast CAA83629 Hypothetical protein R07E5.6 [Caenorhabditis elegans] ref|NP_497888.1| R07E5.6 [Caenorhabditis elegans] 1.0E-128
blast CAA83628 Hypothetical protein R07E5.15 [Caenorhabditis elegans] ref|NP_497889.1| R07E5.15 [Caenorhabditis elegans] 1.0E-125
blast CAA83629 Hypothetical protein R07E5.6 [Caenorhabditis elegans] ref|NP_497888.1| R07E5.6 [Caenorhabditis elegans] 1.0E-123
blast CAA86457 Hypothetical protein T23F11.2 [Caenorhabditis elegans] ref|NP_497950.1| T23F11.2 [Caenorhabditis elegans] 1.0E-120
Sequence
Target Sequence 
>C. ELEGANS:189813_AT
gaagagctgcttggacaaaggtgccaaagatgcgcagaagaagaagaagcagcaggatgt
cgtggataagaagaaggagaaacggaagttgaagaagacacggaccatggaggcatcgag
atcccgtgaagtgtcacacgaagaacatcaccagcctccggtactttcaacgctagcaac
cccatctccagtgccatctccaagtgttccaccaacggctcctccgtcaaccccacgaaa
accaatgttcggtgcagtcagccaatttttgagtggccgaaagcgtcgtgagccatctgc
ggagaaaatcgttgaaccaccatcgaagaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGCTGCTTGGACAAAGGTGCC 477 339 978 Antisense
GAAGCAGCAGGATGTCGTGGATAAG 427 341 1023 Antisense
GACACGGACCATGGAGGCATCGAGA 473 367 1074 Antisense
GCATCGAGATCCCGTGAAGTGTCAC 706 309 1090 Antisense
GAAGTGTCACACGAAGAACATCACC 636 335 1105 Antisense
TCCGGTACTTTCAACGCTAGCAACC 265 589 1134 Antisense
TCAACCCCACGAAAACCAATGTTCG 317 629 1204 Antisense
AATGTTCGGTGCAGTCAGCCAATTT 56 165 1221 Antisense
TGAGTGGCCGAAAGCGTCGTGAGCC 542 567 1247 Antisense
CGTCGTGAGCCATCTGCGGAGAAAA 234 245 1261 Antisense
AATCGTTGAACCACCATCGAAGAAC 302 169 1284 Antisense
Sequence Source Affymetrix Proprietary Database