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[189800_s_at]

Description T20G5.3 /REP_DB=WormBase Gene ID /WP=CE00478 /CHR=3 /FEA=Sanger Annotation /DEF=EGF and CMP repeats (HINXTON) SW:P34576 protein_id:CAA83007.1
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 10      6grp_highest_nonorm > 52      6grp_total > 03      4grp_total > 57      6grp_cgc > 50      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 770
1 2 3 4 range
A 146
(-2.1)
P 		761.9
(3)
P 		711.2
(2.6)
P 		43.9
(-3)
A 		718
B 121.7
(-2.1)
P 		608.9
(1.8)
P 		755.2
(3)
P 		7.1
(-3)
A 		748
C 124.6
(-2.3)
P 		571.5
(1.3)
P 		777.2
(3)
P 		38.9
(-3)
A 		738
avr 130.8
(-2.2) 		647.4
(2.2) 		747.9
(3) 		30
(-3) 		718

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 602
(1.3)
P 		565.9
(0.9)
P 		501.8
(0.3)
P 		779.3
(3)
P 		526.9
(0.5)
P 		166.5
(-3)
P 		613
B 855.3
(3)
P 		682.6
(1.3)
P 		763
(2.1)
P 		720.6
(1.7)
P 		564.1
(0.2)
P 		238.1
(-3)
P 		617
C 738
(3)
P 		544.8
(0.8)
P 		474.6
(0)
P 		653.9
(2)
P 		713.7
(2.7)
P 		209
(-3)
P 		529
avr 731.8
(3) 		597.8
(1.5) 		579.8
(1.3) 		717.9
(2.8) 		601.6
(1.5) 		204.5
(-3) 		527
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 53.1
(-1.4)
P 		165.4
(2.3)
P 		185.9
(3)
P 		6.4
(-3)
A 		180
B 38.8
(-1.7)
P 		150.4
(2.1)
P 		175
(3)
P 		1.5
(-3)
A 		174
C 41.2
(-2.2)
P 		164.3
(0.6)
P 		270.9
(3)
P 		6.6
(-3)
A 		264
avr 44.4
(-1.8) 		160
(1.5) 		210.6
(3) 		4.8
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 111
(-0.4)
P 		201.3
(3)
P 		109.3
(-0.4)
P 		197.7
(2.9)
P 		159
(1.4)
P 		40.5
(-3)
P 		161
B 297.6
(3)
P 		227.2
(1)
P 		185.3
(-0.2)
P 		190.9
(-0.1)
P 		229.2
(1)
P 		88.8
(-3)
P 		209
C 273.6
(3)
P 		166.2
(-0.2)
P 		120.8
(-1.5)
P 		131.5
(-1.2)
P 		230.9
(1.7)
P 		70
(-3)
P 		204
avr 227.4
(3) 		198.2
(1.9) 		138.5
(-0.3) 		173.4
(1) 		206.4
(2.2) 		66.4
(-3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189800_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7526
Sequence Type Exemplar sequence
Representative Public ID T20G5.3 NCBI
Target Description T20G5.3 /REP_DB=WormBase Gene ID /WP=CE00478 /CHR=3 /FEA=Sanger Annotation /DEF=EGF and CMP repeats (HINXTON) SW:P34576 protein_id:CAA83007.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027503(11), NM_001027504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027503 NCBI Caenorhabditis elegans MUscle Attachment abnormal family member (mua-3) (mua-3) mRNA, complete cds. 11/11 None
NM_001027504 NCBI Caenorhabditis elegans MUscle Attachment abnormal family member (mua-3) (mua-3) mRNA, complete cds. 11/11 None
SNAP00000033295 ENSEMBL cdna:SNAP chromosome:CEL140:III:10172819:10183149:1 11/11 None
GENEFINDER00000033348 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10172819:10183149:1 11/11 None
K08E5.3a ENSEMBL cdna:known chromosome:CEL140:III:10160586:10183398:1 gene:K08E5.3 11/11 None
K08E5.3b ENSEMBL cdna:known chromosome:CEL140:III:10167843:10183149:1 gene:K08E5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10172814-10183145(+) 99.31 100.0
Public Domain and Genome References
Ensembl K08E5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42345 Hypothetical protein K08E5.3a [Caenorhabditis elegans] emb|CAA83226.2| Hypothetical protein K08E5.3a [Caenorhabditis elegans] ref|NP_001022674.1| MUscle Attachment abnormal family member (mua-3) [Caenorhabditis elegans] sp|P34576|MUA3_CAEEL Transmembrane cell adhesion receptor mua-3 precursor gb|AAD29428.1| transmembrane cell adhesion receptor MUA-3 precursor [Caenorhabditis elegans] 0.0
blast CAE64964 Hypothetical protein CBG09798 [Caenorhabditis briggsae] 0.0
blast CAH19103 Hypothetical protein K08E5.3b [Caenorhabditis elegans] emb|CAH19087.1| Hypothetical protein K08E5.3b [Caenorhabditis elegans] ref|NP_001022675.1| MUscle Attachment abnormal family member (mua-3) [Caenorhabditis elegans] 0.0
blast S42373 hypothetical protein T20G5.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.2E-61
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 9.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 4.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-4
Pfam IPR000082 EMBL-EBI SEA domain 1.6E-36
Pfam IPR000082 EMBL-EBI SEA domain 1.1E-36
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-4
Pfam IPR000082 EMBL-EBI SEA domain 1.6E-36
Pfam IPR000082 EMBL-EBI SEA domain 1.1E-36
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.2E-61
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.7E-5
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.1E-4
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 4.5E-10
Pfam IPR006209 EMBL-EBI EGF-like domain 2.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.1E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 9.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 4.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-4
Pfam IPR000082 EMBL-EBI SEA domain 1.6E-36
Pfam IPR000082 EMBL-EBI SEA domain 1.1E-36
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 2.2E-61
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 2.1E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.3E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.4E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 6.8E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 6.2E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 9.1E-7
Pfam IPR006209 EMBL-EBI EGF-like domain 4.9E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.2E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.3E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 5.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 7.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.7E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 5.5E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.7E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 1.6E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.4E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 4.8E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 1.9E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 4.3E-4
Pfam IPR000082 EMBL-EBI SEA domain 1.6E-36
Pfam IPR000082 EMBL-EBI SEA domain 1.1E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022674.1 1 3417-3439
NP_001022675.1 1 2833-2855
K08E5.3a 1 3417-3439
K08E5.3b 1 2833-2855
SNAP00000033295 1 2701-2723
GENEFINDER00000033348 1 2720-2742
Sequence
Target Sequence 
>C. ELEGANS:189800_S_AT
gagataccacgattgtacacggaggaggttatacgcaaaacgaatcaagtagctcatcat
tttccggtggagaaagagcatatcaatctcaatcccaacagcaacagagtatgtctcaag
gaatgtctcaaagtatgtcgcagcatgcaacgtccgctggatattcaagctcaggaatgg
agagctcagctcataacagtggatatgcaagtatcagacatactggagagagagaacgcg
ggggtagtgaagaagaattctcaattggccgagctcgtggaatggctgcagcttccagcg
gatatcaacattccagttcggagaatcgagaagttgaagaatattgttcagaagaagaag
atgttgagcacagtgtcggtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATACCACGATTGTACACGGAGG 314 395 8669 Antisense
GTAGCTCATCATTTTCCGGTGGAGA 298 457 8717 Antisense
GCATATCAATCTCAATCCCAACAGC 20 309 8746 Antisense
AGTATGTCGCAGCATGCAACGTCCG 664 57 8800 Antisense
GCAACGTCCGCTGGATATTCAAGCT 652 319 8815 Antisense
AGAGCTCAGCTCATAACAGTGGATA 108 71 8849 Antisense
GAAGAATTCTCAATTGGCCGAGCTC 77 341 8920 Antisense
TTGGCCGAGCTCGTGGAATGGCTGC 144 701 8933 Antisense
AATGGCTGCAGCTTCCAGCGGATAT 223 161 8949 Antisense
GCGGATATCAACATTCCAGTTCGGA 227 291 8966 Antisense
GATGTTGAGCACAGTGTCGGTGACA 691 409 9028 Antisense
Sequence Source Affymetrix Proprietary Database